Pectobacterium carotovorum subsp. carotovorum PC1: PC1_3860
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Entry
PC1_3860 CDS
T00934
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct00040
Pentose and glucuronate interconversions
pct01100
Metabolic pathways
pct02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PC1_3860
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PC1_3860
Enzymes [BR:
pct01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PC1_3860
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ACT14875
UniProt:
C6DGB2
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All DBs
Position
4342995..4344119
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AA seq
374 aa
AA seq
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MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDVAGAVKKTARSMQDIIDIIEEAKLD
SKGKKVKGGAYPLVITYNGNEDALIKAAENDICGQWKKDARGVEIKEFTKGITIIGTNGS
SANFGIWLVKSSDIVIRNMRFGYMPGGAQDGDAIRIDNTPNVWIDHNEIFAKNFECAGTK
DGDTTFESAIDIKKASTNVTVSYNYIHGIKKVGLSGFSSSDTGRDLTYHHNIYDDVNARL
PLQRGGKVHAYNNLYTNVTSSGLNVRQNGIALIERNWFENAKNPVTSRYDGSNFGTWDLR
NNNVMSPADFAKYNITWDKDSKPYVNAEDWKSTGTFPSLPYSYSTVSPQCVKDKLANYAG
VGKNLAVLTAASCN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctactgccttctgcagccgctgggctgttattacttgcggctcaaccgaca
atggcggcaaatacggggggttatgccaccactgacggcggcgacgttgccggtgctgtg
aaaaaaaccgcacgttccatgcaagatattattgatatcatcgaagaagcgaaactggat
tccaaaggtaagaaagtcaaaggaggcgcttacccgctcgtcatcacctataacggtaat
gaagatgcgctgattaaagccgcagagaacgatatctgcggtcagtggaagaaagacgca
cgcggtgtggaaatcaaagagttcaccaaagggattaccatcatcggaactaacggttct
tccgctaactttgggatctggctggttaaatcatccgatatcgttatccgcaatatgcgt
ttcggctacatgcctggcggcgcgcaggacggcgatgcgattcgtatcgataacacgccg
aacgtctggattgaccacaacgagatcttcgcgaaaaactttgaatgcgcaggcacaaaa
gacggtgacaccacattcgaatccgcgattgatatcaagaaagcctcaaccaacgtgacg
gtgtcgtacaactacattcacggcatcaaaaaagtcggtctgagcggcttcagcagcagc
gatacgggccgtgacctgacttaccatcacaatatttacgatgacgttaacgcccgcctc
ccactgcaacgtggtggtaaagttcacgcctacaataacctgtataccaacgtcaccagt
tctggcctgaacgtgcgccagaatgggattgcgctgatcgaacgtaactggttcgaaaat
gcgaaaaacccagtgacctcacgttacgacggttccaacttcggtacgtgggatctgcgt
aataacaacgttatgagcccggctgacttcgctaaatacaacatcacctgggataaagat
tccaagccctacgtgaatgctgaagactggaagagcacaggcacgttcccttctcttcct
tacagctactctaccgtttcaccacagtgcgtgaaggataaactggcgaactatgctggc
gtgggcaaaaaccttgccgtcctgacagcagcaagctgtaactaa
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