Pectobacterium carotovorum subsp. carotovorum PC1: PC1_4011
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Entry
PC1_4011 CDS
T00934
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC1_4011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pct03021
]
PC1_4011
03019 Messenger RNA biogenesis [BR:
pct03019
]
PC1_4011
Transcription machinery [BR:
pct03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PC1_4011
Messenger RNA biogenesis [BR:
pct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PC1_4011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ACT15026
UniProt:
C6DHF3
LinkDB
All DBs
Position
complement(4526874..4528226)
Genome browser
AA seq
450 aa
AA seq
DB search
MVEGCYRGTDDPAIPFTLIVRDLPRVKEPTTMNLTELKNTPVSELIALGENMGLENQARM
RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF
NLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMER
GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI
DERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR
LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDE
VIYEEFKGTGNMELHLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHP
MGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtggttgaaggctgttatagaggcacggatgatcctgccataccattcacgttaatagtt
cgagatttaccccgagttaaagaacccaccactatgaatcttaccgaattaaagaatacg
ccagtttctgagttaattgctcttggcgaaaatatgggtctggaaaaccaggctcgcatg
cgtaaacaggatattatcttcgctattctgaaacagcatgccaaaagcggcgaggatatt
ttcggcgatggtgtgctggagatattgcaggatggcttcggcttcctccgctcagcagac
agctcctacctcgcaggccccgatgatatctacgtttctcccagccaaatccgccgtttt
aacctccgcactggtgacaccatttctggcaagattcgtccgccgaaagaaggtgaacgc
tactttgcgctgctgaaagttaacgaagtcaactacgacaaacctgaaaacgcccgcaac
aagatcctgttcgaaaacctcacgccactgcatgcaaactctcgtctgcgtatggaacgc
ggtaatgggtcgacagaagatttgacggcgcgcgtgctggatctggcttcgccgattggc
cgtggtcaacgtggtctgatcgttgcaccgcctaaagcaggtaaaaccatgctgctgcag
aacattgcgcagagcattgcttacaaccatcctgactgcgtactgatggttctgctgatt
gacgaacgtccggaagaagttaccgagatgcagcgtctggtgaaaggtgaagtggttgcg
tcaacgttcgacgaaccggcttctcgtcacgttcaggttgccgaaatggtgatcgaaaaa
gcgaagcgtctggttgagcataagaaagacgttatcatccttctggactctattacccgt
ctggcgcgtgcctacaacaccgttgttcctgcctcgggcaaagtgttgactggtggtgtg
gatgccaacgccctgcatcgtccgaagcgtttcttcggtgcggcacgtaacgttgaggaa
ggcggtagcctgaccattatcgccaccgcgctggttgatactggctccaagatggatgaa
gtgatttacgaagagtttaaaggtacaggtaacatggaactgcacctggcgcgtaaaatc
gcagaaaaacgcgtcttcccagcgattgactacaaccgctccggtacgcgtaaagaagaa
ttgcttaccacctctgaagaattgcagaagatgtggattctacgcaagatcatccaccca
atgggcgagatcgacgcgatggaattcctgatcaacaagttggcgatgacaaaaaccaac
gatgaattcttcgatatgatgaaacgttcataa
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