Candidatus Protochlamydia amoebophila: PC_RS00035
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Entry
PC_RS00035 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PC_RS00035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcu03400
]
PC_RS00035
Enzymes [BR:
pcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PC_RS00035
DNA repair and recombination proteins [BR:
pcu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PC_RS00035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
CAF22732
UniProt:
Q6MFB7
LinkDB
All DBs
Position
11759..15346
Genome browser
AA seq
1195 aa
AA seq
DB search
MFLLKFYVGFNKTVCKEGCKLLTLTVDTPKSEPFVSDLEVFFSNQLSILYEQLKNNLFGF
KQTPFKKRLVIVYGPAMQTWLTLKMAQDPDLGIAAGIEFLYLNQAFETLIHYFQLKNEKI
PSILELSLAIEKELLTVLQDYHRLSDEEQQDWLTLIYYLKLNSKQVGENLKLTRKMEKRL
TGLSYHLAKIFQEYGKYAYSLVSKWEKSEHRGWQSRLWKSLFGGNQGWTYWTKAFQKTLK
FFPECEVHFFSISFISKAEFQFLSKLANVAPIYYYLLSPCAVFWSDIRSDNETRYLQTYW
QQKLGSKASQVLQLEELLRDRNPLLANFGKLGREMAYQIEESQATTHAGYILPSHVSELN
DEIFFQEDLFLKESLQPLTLLHAIQADILMMRNPEGKPPFNFERKDDSIQLHIAPSIRRE
IQILYHNLLKLFEKDSTLQPNDIIVMAPQISDYVPYIQSVFGLEESQLDFQILDLGMQAQ
SEIVQGFFQLIRLSESRWEVSELLQLFGHRLFQRCHQLTQSDYYLIQEWIQQAGIRWGED
WLHRNELLQRHHCEKEMVDSSSVGTWNFGLTRLLLGLTTVVKSADSHSFDSIPCEGIDFS
QAELMERWIRLLHSLRDDLSPLHDRSQMCMEEWSCYLSCLLDTYFKCEFEDSQSIADYEE
LKSQFKLLGDSAKTFKETKFSFQTIKFHLNNLLQQRGITYRESHLQTIRFCSMMPLRSIP
AKVIAVLGMQEGAFPRAGYHTSLNLMVGQDNLDYNPNSTDYDRYLFLEALQSVTDVFIVS
YQGYTYQDSKVLQPSLIIEEFFTYLDKYYLIQNKKISEQCVSKHPFDAFDVSYFKPNSIL
NNYSQFDYRIAEQYYQTHKTPSHRLLKQFILSNYSLEDILPSHTVIDLKTLNTLVRSPVK
FYLNRGLDIYLEGYEDRIIKNQEELGLSALNKYQLKQFALKEPFEKVMQIADKEGKLPLG
MFKTVATKRFKDEIDEVHQRLYKHGINPSELFQIEFCTSCSEPCQIQKDQWLLPALQLNY
SDQYQISIIGKLPFVSKKGLVVLSQGSGFSDAWKAWPQFLLFNYATTFNIEAIERNLILS
KSSEVKKAFFKDSIPYLKHLINYYALSMRNFSPLFPDWIPSLIEGDEQAIQNYMKQVFSN
SFGAFLNQELRWVFNKDHLPCPKILIESWQEIGKQLAGDLIQLWYPPKKKKGEDA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgctaaaattttatgttggattcaacaaaactgtatgcaaggaaggatgtaaa
cttctaaccctaacagttgatacaccaaaaagtgagccctttgtgagcgatttagaagtt
ttttttagtaaccagctatcaatcctctacgagcagctgaagaataatcttttcggtttt
aagcaaacgcctttcaaaaagcgacttgtgattgtttatggaccagccatgcaaacatgg
ctaactttaaaaatggcgcaagaccctgatttaggaatagcagctggaattgaatttcta
tatcttaatcaggcttttgaaacactcattcactattttcaattaaaaaatgaaaagata
ccttctattttagagctatctttggccattgaaaaagaattattaactgttttgcaagat
tatcatcggttaagtgatgaagaacaacaagactggttaactttgatttattatttaaaa
ttaaattctaagcaggtgggcgaaaatcttaaattaacacgtaaaatggaaaagcgattg
acaggtttaagctatcatttagctaaaatttttcaagagtatggaaaatatgcttattca
ttagtctctaaatgggaaaaatcagaacatagaggttggcagagtcgtttatggaaaagc
ctttttgggggcaatcaaggatggacttattggactaaagccttccaaaaaacacttaaa
ttttttcctgagtgtgaagtccattttttctcaatcagttttatttctaaagctgaattt
caatttttatcgaagctggcgaatgttgcccctatttactattatttactttctccatgc
gcagttttttggagtgatattcgttccgataacgagacaagatatttgcaaacctactgg
cagcagaaattaggctcgaaggcttctcaagttttacaattagaagaacttttaagagat
cgaaatccccttttagctaattttggaaaacttggaagagaaatggcttatcaaattgag
gagagtcaagctactactcacgctggttatatccttccaagtcatgtgagtgaattgaat
gatgaaatattttttcaagaagatctttttttaaaggagtctttacaacctttgactctt
cttcatgcaattcaagctgatatattgatgatgcgtaaccctgaaggaaagcctcctttt
aattttgaacgaaaagatgattcaatccaattgcacattgctccctcgattcgacgtgaa
atacaaatcctttatcacaatcttttaaaattatttgaaaaagattctactttgcaaccc
aatgacattattgtgatggctcctcaaatttctgattacgtcccttacattcaaagtgtt
tttggtttagaagaaagtcaattagattttcaaattcttgatttgggcatgcaagcacaa
agtgaaatcgtccaaggttttttccaattgattcggttaagtgaaagtcgttgggaagtg
agtgaattattacagttgtttgggcaccgtctatttcaacgatgtcatcaattgactcaa
agtgattattatctcattcaagaatggattcaacaagcaggcatccgttggggagaagat
tggctacatcgaaatgagttacttcagaggcatcattgtgagaaagagatggtagattct
agctcagttggaacctggaattttggtttaactcgtttgttacttggattaacaacagtt
gtcaaatctgccgattctcattcttttgattctattccatgtgaaggaattgacttttct
caagcagaattaatggagaggtggattcgattgttgcattctttacgagatgatttatcg
ccattacatgatcgctctcaaatgtgtatggaagaatggtcttgttatctctcttgttta
ttagacacttattttaagtgtgaatttgaagattctcagtcgatagcagactacgaagaa
ttaaaatctcaatttaagcttttaggtgattctgcaaaaacttttaaagaaacaaaattt
tctttccaaactattaaatttcatttgaacaatcttttacaacaaagaggaattacttat
cgagaaagccacctgcaaaccatccgattttgttccatgatgcctcttcgttctattcct
gccaaagtaatcgcagtactaggaatgcaagaaggagcttttccccgcgcaggctatcat
acttcattgaatttaatggttgggcaagacaatcttgactataacccaaactctacagat
tatgatcgttatttatttttagaggctcttcaatctgttacagacgttttcatcgttagt
tatcaaggatatacctaccaagattccaaagtattgcagccaagtttgattattgaagag
tttttcacctatttggataaatattatctcattcaaaataaaaaaatttctgaacaatgt
gtaagtaaacatccatttgatgcatttgacgtctcttatttcaaaccaaattctatttta
aataattactcacaattcgactatagaattgctgaacaatactaccaaactcataaaact
ccttctcatcgattacttaaacaatttattttaagtaactactctcttgaagatatcctt
ccttctcacacagtgattgatttaaaaactttaaatacgttagttcgctcacctgttaaa
ttttatttgaatagagggttagacatttatttggagggctatgaagatcggattattaaa
aaccaagaagagcttggattatcagccttaaataaatatcagctcaaacaatttgcatta
aaggaaccatttgaaaaagtgatgcagattgcagataaagaaggaaaacttcctttggga
atgttcaaaacagttgcgacaaaacgtttcaaagatgaaatagatgaagtgcatcaaaga
ttgtataaacatggtattaatccttccgaactttttcaaatcgaattttgtactagttgt
tccgaaccttgccaaattcaaaaagatcaatggttacttccagctcttcaactgaattat
tctgatcaatatcaaatttctataattggaaagttgccctttgtttctaaaaaaggcctt
gttgttttaagtcaaggaagtggattttcagatgcttggaaagcatggccccaatttctg
ctttttaattatgctacaacttttaatattgaggcgattgaaagaaaccttattctttca
aaatcttcagaggtcaaaaaggctttttttaaagatagcattccttatttaaagcatttg
attaattattatgcactatctatgcgcaatttttctccgctctttcctgattggattcct
tcccttattgaaggggatgaacaggcaattcaaaattacatgaaacaggtcttttcaaat
tcttttggagcttttttaaatcaagaattaaggtgggtttttaataaagaccatctacct
tgcccgaaaattttaatcgaatcttggcaagagatcggtaaacaactagccggagatttg
attcaattatggtatcctcctaaaaagaagaaaggggaagatgcatga
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