Candidatus Protochlamydia amoebophila: PC_RS00040
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Entry
PC_RS00040 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PC_RS00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcu03400
]
PC_RS00040
Enzymes [BR:
pcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PC_RS00040
DNA repair and recombination proteins [BR:
pcu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PC_RS00040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF4980
Motif
Other DBs
NCBI-ProteinID:
SPJ31550
UniProt:
A0A2P9H976
LinkDB
All DBs
Position
15343..18858
Genome browser
AA seq
1171 aa
AA seq
DB search
MKNFNVLDRQLILHQHYLLEASAGTGKTFSIQNIVVRLLIENQLEQEALPLSKILVVTFT
KAATRDLKLRIRLNIEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQA
LFEFDQAQIFTIHAFCARMLRQYAIESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLE
NFSPAQLEIILKHDPDQKKLLRAIQSGYEFEELPTFQQIYQQFLEGMQNLQRTYSISSSL
LMEDFQEQAPFFRNYKGAKSKADTLIKISRFVALFDQTEWTVENFDQLICDGLEWVLALD
PKLLKNPAASFRLNYPGFTALLHHTLERVVYLARDESILIARLAKACQKLLRNYQREEEK
LSPDDLLRKMDWAIGQENFLKQIQMIYQAAIIDEFQDTDPLQWQIFRRLFLPQDKTWKGY
LYLVGDPKQSIYSFRQADIYTYLAAAQALGHEHCFSLDVNYRSQPALVNALNVLFSPDHT
PKFIPLPKTNFHLTYQPVFASTFNQTRLFEDEKGAVHFFMGDGSNKKNSTIQDLEQKVFF
PFIAQEIRRLRKQKTLAYSQFAVLVRDRYQALRLAEYFDSYQLPYLNQRGTSLAESPALN
ALIDLIKAVLHPQNIGTLRTLLGNSLIGWSHEKLHDSSNLESILSVIQSLKQVLIEQGFS
IFYDRFLQSCWGKNKLSILEQLLAKEGGVDFYHDLQQIAEIVINHQYHEWNGPEGLIPFL
DQFQKWDENEDPRVKRFQDPSKDGIKILTLHVSKGLEFDIVFALGLIQRNSFKDELIPIE
KEGKFVLIPLEESSEQRLHYCEEIDAEKMRQLYVAMTRAKYQLYIPISLHIPSEQIKYGE
ASPLDLLLGRLGQTECSYETLYDRIRHFNGQSFIKFMEEIGSQNDMTYSIHREIFLEKNK
KDSVPFIDLEPPKSISILTTPLLMSSFSSLNRISSFSLSQTPPHDFNNSIKTEHTLPASS
ETGILIHELLEKISFRDFKGINLAVETLPLIRPWIQNEMYRPWENVLAALVYQVLNVDLG
IYSSPFCLADIEPSKLVREMTFLFPYESDLAIEGLVEGQGLIKGFIDLIFVHKGKYYIVD
WKSNWLGSSNECYDFFHLHQAMLDHNYFVQAKIYTEALKRYLKLVETRAFEECFGGFFYL
FLRGIQSNKQSGIYFCDAQDLIKIFSPKNYE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttaatgtgttagataggcagttaatccttcatcaacattacctacttgaa
gcatctgcaggaacaggaaagactttttctattcaaaatattgtagtccgtttattaatt
gaaaatcagctagaacaagaagccttaccgctaagtaaaatcttagtcgtcacatttacg
aaagctgcgacccgagatttaaaactacgtattagattgaatattgaatatgccttagaa
gtatttaatgaatggttaagtcattcaaatgtattagaaaatactccggactatttaaag
gccgtcattgaagcaggaatagaaagtgttttaaaagcaaaaaaaaagttacagcaagcg
ttgtttgagttcgatcaagcgcaaatttttacaatacatgctttttgtgcgcgcatgctc
aggcagtatgcaattgaaagtgatataggctttcatgcgagttatggggaagaaactttt
cctccgtcagaaattttagcggtcattcaagatttttttcgaacagagattcgtttagaa
aattttagccctgcacaacttgaaattattttaaaacatgatcctgatcaaaaaaaacta
ttaagagctattcaaagtggctatgagtttgaagaactgcctacatttcaacaaatttat
caacagtttcttgaaggcatgcagaatttacaaagaacttattccataagttcttcttta
ttaatggaagattttcaagagcaagctcccttttttcggaattataaaggagccaaatcc
aaagctgatacattaattaaaatttctcgatttgttgctttgtttgatcaaactgagtgg
actgttgaaaactttgatcaattaatttgcgatggtttagaatgggtgctagccttagat
ccgaagttacttaaaaatcctgcagcatcctttcgcttaaattatccaggttttacagct
ttattgcatcacactttagagagagtcgtctatttagcacgggatgaatctatattaata
gctagacttgccaaagcctgccaaaagctattgcgcaattaccaaagagaagaggaaaag
ctttccccggacgatttattaagaaaaatggattgggcaattgggcaagaaaacttttta
aaacaaattcaaatgatttatcaagcggctattattgatgaattccaagatacagatcct
ttacaatggcaaatttttcgacgtttatttcttcctcaagataaaacttggaaaggttat
ttatatttagtcggtgatcctaaacaatcgatctattcttttaggcaagcagatatttat
acttatttggcagctgcgcaagcactcgggcatgagcattgtttttctcttgatgtaaat
tatcgttctcaaccagcgttagtgaatgctttgaatgtcctattttctccagatcatact
ccaaagtttattcctcttcctaaaacaaattttcatttaacttatcaacctgtttttgct
tctactttcaatcaaacacgtttatttgaggatgaaaaaggagctgtccacttttttatg
ggggatggaagcaataaaaagaattcaaccatacaagatttagaacaaaaagtatttttc
ccttttattgcacaagaaattagacgcttaaggaagcaaaaaacattggcctatagccaa
tttgctgttttagtaagggatcgttatcaagcgttacgtctcgccgaatattttgactcc
tatcaattaccttatttaaatcaacgagggactagtttagctgaatcacctgcattgaac
gccttaatagatcttattaaagctgttcttcatccgcaaaacatagggactcttaggaca
ctgttaggcaattctttgattggttggtctcatgaaaagttgcatgattcttcgaattta
gaatcgattttgtcagtgattcaatctttaaagcaagttttgatagagcagggattctcc
atcttttatgatcgtttcttacaaagttgctgggggaaaaataaactttctattctggaa
caattattagcgaaggagggaggtgttgatttttaccatgatttacagcaaattgctgaa
attgtcattaatcatcaatatcatgaatggaatggtcctgaagggttgattccattttta
gatcaatttcaaaaatgggatgaaaatgaagatcccagagttaagcggtttcaagatcct
tctaaagatggaattaagatcttaacattacatgtgagtaaaggtttagaattcgatatc
gtttttgctttaggtttaattcaacgtaattctttcaaagatgaattgattcctattgaa
aaagaaggcaaatttgttttaattcctttagaagaatcaagtgaacagcgacttcactat
tgcgaagaaattgacgcagaaaaaatgaggcaactttatgttgccatgacgcgcgcgaaa
tatcagctttatattccgataagtctccatattccttctgagcaaattaaatatggtgag
gcatctcctttagatcttcttttaggtagactcggacagactgagtgtagctatgagacc
ctttatgaccgcatccgacatttcaatggtcaaagttttattaaatttatggaggaaata
ggttctcaaaatgacatgacctattcgattcacagagaaatttttctagaaaaaaataag
aaggattctgttccctttattgatcttgagccacctaagtctatttctattttaacaaca
cccttattaatgagttctttttcaagcttaaatcgaatctcttctttttcactatcgcag
actcctcctcacgatttcaacaattctattaaaactgaacataccttaccagcaagcagt
gaaacaggtattcttattcatgagctattagaaaaaatttcgtttcgtgattttaaaggg
ataaacttagctgttgaaactcttcctttgattcgtccatggatccaaaatgaaatgtac
cgaccttgggaaaatgttttagctgcactagtctatcaagtcctgaatgtagatttaggc
atttattcttcccccttttgtttagcggatattgagccatcgaaattggttcgtgaaatg
acttttctttttccgtatgaaagtgatttagcaatagagggattggtagaagggcaagga
ttaattaaaggttttattgatttgatttttgttcataaaggtaaatattatattgtcgat
tggaaaagtaattggcttggatcatcaaacgagtgttatgatttttttcatttacatcaa
gctatgttggaccataattatttcgtacaagctaaaatttatactgaagcactgaaacga
tatttaaaattggtggaaacacgagcatttgaagaatgctttggcggatttttttactta
tttttaagaggaattcaatctaataaacaatcaggaatttatttttgtgacgcgcaggat
ctaataaaaattttctcgcctaaaaattacgagtga
DBGET
integrated database retrieval system
