Candidatus Protochlamydia amoebophila: PC_RS03305
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Entry
PC_RS03305 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PC_RS03305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcu03400
]
PC_RS03305
Enzymes [BR:
pcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PC_RS03305
DNA repair and recombination proteins [BR:
pcu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PC_RS03305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
HHH_RecD2
AAA_30
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
SLFN-g3_helicase
PhoH
RsgA_GTPase
PIF1
DEAD
UvrD-helicase
AAA_28
AAA_22
AAA_29
nSTAND3
T2SSE
ABC_tran
AAA_16
Herpes_Helicase
AAA_10
FtsK_SpoIIIE
AAA
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CAF23413
UniProt:
Q6MDD6
LinkDB
All DBs
Position
complement(858601..860766)
Genome browser
AA seq
721 aa
AA seq
DB search
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLI
HGRQFEISSFRVEAPADILGIKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRL
LEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAFAQKIFKKYGSQSILKLKDNP
YCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKN
GVSTFRSINKEKAVEWVQAQLKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAIL
QITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEYDFKSTGGFKRNRENPLDCDL
IIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNR
YGFNPNQDIQVLAPMKKGLIGTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDY
QKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDELILAYAISVHKFQGSECPCV
VMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaatctgcggttacgttgaaagattgacatttcataattcagaaaatggatat
accgttgcacagctccaacaaccaaaacaaagtgaattaacttgcattgttggatgtatg
ccaggtattcagccaggagaaacgattcgctgtaacggaaactggaaaacgcatctcatt
catggaagacaatttgaaatatctagttttcgagtcgaagcgcccgccgatattttaggg
atcaagaaatatttagggtctggcttgattaaaggaattggaccgaaatacgccactcgc
attgtagatatttttggaatagacactctaaaaattattgaagagtctccccaaaggcta
ttagaaattgaaggactgggaaccaaacgagttgaaaaaattcaagcctgttggatcgaa
caaaaatcgattcgagatgtaatgatttttcttcaagggcatggcgttagtccagcgttt
gctcaaaaaattttcaaaaaatatggttcgcaaagcattttaaaacttaaagataatcct
tattgcttggctcgagatatttttggagtgggctttaaaactgctgatacagttgctcaa
aaaatgggcatttctaaagattcagagcaaagaattggagcaggaattgagtatgtttta
tctcaattatcgggagatggacatgtttgctatccggtcgatgagtttttaaaagaggct
gaaactcatttagaagtaaaggcagatttgattgaaaaaagactcgaagggcttcaaagt
gaagaaaggattatactcgctcaattaattcatgaaggaaaaaaacgggactttatttgg
atcaagccattatttattgccgaaacaggaattgcacgagaacttaaaagactcaaaaat
ggagtcagtacctttcgctcaattaataaagaaaaagctgtggaatgggtacaggcacaa
ttaaaaattgaattagctcctaatcaaaaagaagccgttgccaaagcaatttcgacaaaa
ttacatattattacaggtggcccaggaacagggaaaagcactattacaaatgcaatttta
cagatcactgcgattctaactcaaaaaattttgttagcagctccaacaggaagagcagct
aaacgaatgagcgaaattaccaaacgaaaagcctctacgattcacagccttctggaatat
gatttcaaatcaacaggaggttttaaacgaaatcgagaaaatcctttagattgcgactta
atcatcatcgatgaagccagcatgattgatacgtttttaatgtacagccttttaaaagcg
ctacccgaccacacgcgagtgatttttgttggggatattcaccaattgccgagcgtagga
ccgggtaacgtcttaagtgacatgattacgtctcttaccatctctgtaacgacattaaaa
gaaatttttagacaagcggcaggttctcacattattacaaatgcccatcgagtcaataaa
ggaatgtttcccagcctttataatggacaaaacagtgactttttctttatcgaatgtcag
gaaaatgaagaagttttaaatactatagtcaaattggtctcccaaagacttcctaatcgc
tatggatttaatcctaatcaagatattcaagtattggcccccatgaaaaaagggttaatt
ggcacagaacacctcaatcaatccctacaaatgattcttaatccaaaagaacacgctctt
tttagaggagggcaaaaatttcaagtgggtgataaagtcatgcaaattcgcaatgactat
caaaaagaagtttttaatggagatattggttatattctcaacattgattcagaagaacag
caagttttaattcaatttgaagataaagaagttgtttacgattatactgatttagatgaa
ttgattttagcttacgctatttccgttcataaattccaaggaagcgagtgtccttgcgtt
gtcatgccagttcatacaagtcattttatgttacttcatcgcaatttactttatacaggc
attacacgtggaaaaaaacttgttgttttggttggcactaaaaaagctttagcaattgct
gttaaaaaagatgatgttcaaaaaagatatactagccttcaaaatgctttaatggaaatt
atttaa
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