Candidatus Protochlamydia amoebophila: PC_RS05050
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Entry
PC_RS05050 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC_RS05050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcu03019
]
PC_RS05050
03016 Transfer RNA biogenesis [BR:
pcu03016
]
PC_RS05050
Enzymes [BR:
pcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PC_RS05050
Messenger RNA biogenesis [BR:
pcu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PC_RS05050
Transfer RNA biogenesis [BR:
pcu03016
]
Prokaryotic type
tRNA degradation factors
PC_RS05050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
Rho_RNA_bind
DUF4423
Motif
Other DBs
NCBI-ProteinID:
SPJ31762
UniProt:
A0A2P9H9V7
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All DBs
Position
1268668..1270983
Genome browser
AA seq
771 aa
AA seq
DB search
MVKTSKKSKQKAPTMRSAKEEKLFNNLLKITEQFMRGKSFMPLSLEVLMQRLALPPQHKE
IFQEVLNKLQQQGLIESKEEKYEWKKSQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFI
PKHLTKNGVDGDVVEVILNQEVISDKGPEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHV
PLLGTQQRVVVHPTEEHQLQIGDRIVMEVIDWGSKETETICRFSHYLGHISDPSCDVYAA
IEEFELRSDFQTAAIEEANNLGKSVSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTR
DAEGIYNLAVHIADVSHYVQPGTALDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPN
VNRLAVSVLMRIDSSGNLLDYRFTRSVIKSAKRFTYKEAKKVLDGQKNSPYKPHLELMVE
LCRLLKQKRYERGSIEFSLPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAW
DLSQKGKNLTYRIHDEPSEENLRDFSTLAAAFGFKLPDLPTPQDLQKLFEKAAETAYSNY
LASSYIRRMRLAAYSAENIGHYGLSLTHYCHFTSPIRRYVDLVVHRILFGESDRFDDLQE
IANYCSEQERISAKAENSVVILKKLRLLEERHQKAPEHEYQAIITRVKNFGIYFEIFDLL
LEGFIHISDLGEDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEKIDFISQETKWYVLPS
VSTPKKSIARKRSASKEYQKHLNKKCSTGKYNLKKKQAASMTKLGKKKRKR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaaccagcaaaaagtcaaaacaaaaggctcccacaatgcggagtgcaaaagaa
gaaaaactattcaataatttattaaaaattacagaacagtttatgcgcggtaaaagcttt
atgcctttatccctagaagttttgatgcaacgtctcgcccttcctcctcaacacaaggaa
atttttcaagaagttcttaataaattacagcaacagggattaattgaatcgaaagaagag
aaatatgaatggaaaaaatcccaagcagatgtggtgacgggaattttaaaaatgcatccc
cgaggatttggtttcgttcaagttacgattcctaaaaattttgaacaagacatttttatt
cccaaacatttaacaaaaaatggtgtagacggagacgttgtcgaagttatccttaaccaa
gaagttatctctgataagggacctgaagggaaaattgttgctattctttctcgtggaaga
actcatatggctggaatcatccgccagcttgataaagataggatgttcattgctcatgtt
ccgctacttggtactcaacaacgagttgtcgttcatccaaccgaagaacatcaattgcaa
attggtgatcgcattgtcatggaagtcatcgattgggggtcaaaagaaacagaaacaatc
tgtcgcttttctcattatttaggtcacatttcagatccttcatgtgatgtctatgcagca
attgaagaatttgagttaaggtctgattttcaaacagctgcgattgaagaagctaataac
ctgggaaagagtgtttctaaaaaagatattcaaaatagagaagatttaagagaactaatt
tctctgactattgacccagatacagcaaaagactttgatgatgctcttagtttaacacgt
gacgcagaaggtatctataatttagccgttcacattgccgatgtttctcattatgtgcag
cctggaactgctctcgatgaagaagctaaagcacgatgtaactctacttattttccagga
tattgcgtccccatgcttcctggggcattatctgaaaatttatgtagcttaagaccaaat
gtaaaccggttagctgtttctgttttaatgcgcattgacagttcgggaaatttacttgat
tatcgttttactcgctctgtgattaaaagcgcgaaacgctttacctataaagaagccaaa
aaagtcttagatgggcaaaaaaacagcccttataaaccgcatttagaactaatggttgaa
ttatgtcgtttattaaaacaaaaacgttacgaacgcggtagtattgaattttctctaccg
gaactcgttattttagtagatgaaaaaggaaagccttattcaaccgaatatattacttat
gatattacacatcaaatggttgaagaattcatgttgaaggctaatgaaatcgttgcgtgg
gatttaagccaaaaagggaaaaatttgacttatcgtattcacgatgaaccttcagaagaa
aatcttcgtgatttttccacgttagctgccgcttttggattcaaattacctgatcttcca
actcctcaagatcttcaaaaattatttgaaaaagctgcagagacagcttacagtaattat
ttagcatcgagctacattaggcgaatgcgtttagctgcttattcagcagaaaatattggt
cattatggattaagcttaacccattactgccattttaccagccccattagacgctacgtt
gatttagttgttcaccgtattttatttggcgaaagtgatcgttttgatgatcttcaagaa
attgctaattattgttcggagcaagaaagaatcagcgcaaaagctgaaaatagcgttgtg
atattaaaaaaacttcgactcctagaagaaagacatcaaaaggccccggaacatgagtat
caagctatcattactcgagtcaaaaatttcggcatttattttgagatctttgatcttctt
ttggaaggatttattcatatttccgatttgggtgaagattattttgtctatgaagaagaa
aaaatgcttttgagaggtgctaaacacggagcaagatattctcctggcgataatctcgtt
gttatgttagaaaaaatcgattttatttctcaggaaacaaaatggtatgttttaccatcc
gtttctacacctaagaaatccattgcacgtaaaagatctgcgtccaaagaatatcaaaaa
catttaaataagaaatgctcaaccggcaaatataatctcaaaaaaaaacaagcggcttct
atgactaaacttgggaagaaaaaacggaaaagataa
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