Candidatus Protochlamydia amoebophila: PC_RS07470
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Entry
PC_RS07470 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC_RS07470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcu03019
]
PC_RS07470
03009 Ribosome biogenesis [BR:
pcu03009
]
PC_RS07470
Enzymes [BR:
pcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC_RS07470
Messenger RNA biogenesis [BR:
pcu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC_RS07470
Ribosome biogenesis [BR:
pcu03009
]
Prokaryotic type
rRNA helicases
PC_RS07470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Helicase_RecD
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAF24283
UniProt:
Q6MAW6
LinkDB
All DBs
Position
complement(1892742..1894289)
Genome browser
AA seq
515 aa
AA seq
DB search
MTQDSIIEQDLAFEQFGLKAPILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTG
KTAAFGLPALHLIHDNPGSQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFRP
QIEALQRGVQVIVATPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFL
PAKRQTLLFSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAIL
RLLDSEEPAKSIIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIR
VLVATDVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREF
QRYEKVTGAPINREIIPTLEDVKKLKRQKLVSRIQNQPLHQETELVLELMKEVDHSTLVS
KFISFVLEQETIQGPDRIGVEPRGQERDTRGQRTDKFNDERRRANRPQQKFGKANGFKKE
HDKGFKKTFGQKNRASHPSKVPSSAAGFKERTRSI
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagattcaattattgagcaagatttagcttttgagcaatttggtttaaaagcc
cccattttacaagcattgcaagaagctggttttaaaatagcaagtcctattcaaaaacaa
gcaattcccgtcgtattagcagggcatgatgtagttgctcaggcgcacacaggaacagga
aaaacagctgcatttggtttgccagctttacacctaatccatgataacccaggctctcaa
cttttagtattaacccccacgcgtgaattagccagtcaagtaagtgatgagttatttcgt
ttagggaggcatttaggaattcgtacagcaacaatttgtggcggtaaatcctttagacct
caaattgaagctttacagcgcggggttcaagttattgtggctacacccggtcgattacaa
gatcttttagaatctgatagcttacctgattttcggcccgctattgtcgttttagatgaa
gcggatgaaatgttagacatgggatttttagaagcaatccaaagaatcttcactttttta
ccagcaaagagacaaactttacttttttcggcgacaatgccctcagctatccaaaaatta
gctcaccaaatattaaaaaagcctattttcatcagcgtcacgcaaaaagagacgacaaat
aaagatatcaagcaagtttattatgttattcgtgaagatgaacgcgacgatgcaatttta
cgtttgttagacagtgaagaacctgctaaatcaattattttttgccgaacaaaaaaagat
gttgatcgtttatcaacaacgttagtggctaatggctatcatgctcgaggtttacatggt
gatatggaacaaccacaacgagaagaggttattcgccattttcgttctgaacaaattcgt
gttttagtcgcaactgacgtggctgctagaggtttaagtgtttcagacgtttctcatgtc
tttaattaccatctcccttttgatcctgccagctatgttcatagaattgggcgtacaggt
agagcgggaaataaaggggtggcgagtaccttcgtcacacttagagaatggcgagaattt
caaagatatgaaaaagtgactggtgctcctattaatcgagaaattattccaactcttgaa
gatgtaaaaaagttaaagagacaaaaacttgtaagtcgaattcaaaatcaaccccttcat
caagaaactgaattagttttagaattgatgaaagaagtcgatcattcaactttggtctct
aagtttatttcatttgttttggagcaagagactattcaaggtccagatcgaattggtgta
gagccaaggggtcaagaaagggatacgagagggcaacgcactgacaaatttaatgatgag
cgtcgccgagctaatcgaccccaacaaaaatttgggaaagctaacgggttcaaaaaagag
catgataaaggctttaaaaaaacttttgggcaaaaaaatcgtgcaagtcacccaagtaaa
gtacccagttcagcagctggttttaaagaacgtacacgttctatttaa
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