Psilocybe cubensis (magic mushroom): JR316_0000371
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Entry
JR316_0000371 CDS
T08288
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0000371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcub03041
]
JR316_0000371
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JR316_0000371
Spliceosome [BR:
pcub03041
]
Complex C
Other components
Step II factors
JR316_0000371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
ABC_tran
nSTAND3
AAA_30
T2SSE
AAA_19
Ploopntkinase3
GIPC1_GH2
PhoH
Motif
Other DBs
NCBI-GeneID:
71966692
NCBI-ProteinID:
XP_047753932
LinkDB
All DBs
Position
1:complement(1276283..1280090)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSDLYQLEFLSLINKITQELDNHVGVNDKTVAEFIVALHESSGKSLANFKAKLQENGL
SPPDSFVETVDRLILTLHPKYKKRQVNKSAKAKGKAKANDDEVSDLELKRRMFPGLAMKD
KEVPPAVSEDDFLKELGDLVAGKKRAASPNMDASPKRRRPDLSPPRRGRSRSPRRGDGRV
NDNFGDGRDARYGDGRSDRNGYRNGGRRQLDERPVLFKIYDGKVSSLKEFGAFVTLEGVA
GRVEGMVHVSNIQVGARANSAADLLSRGQHVKVKVMSVAGNRIGLSMKDVDQATGKDLTP
HLRIKSEAEMEEERIRAERAASSGANAVPLRSKEDSAPVRSAKRLTSPERWEIKQLIASG
AIDASEYPDLDEEYNNPMAHAEIEEELDVEIREDEPPFLAGQTKRTLDLSPVKIVKAPDG
SLNRAALAGASLAKERRELRQQEANEEADSQARDFSQPWLDPMSKDSDKIFAQDLRGNLK
GQKAGDVPAWKESSFNKTTTFGQITNLSIQDQRKSLPIYKLREPLLKAIEEHQVLIVVGD
TGSGKTTQMVQYLAESGYADRGRIGCTQPRRVAAMSVAKRVSEEVGCRLGQEVGYTIRFE
DCTSPETRIKYMTDGMLQRECLIDPLCSSYSVIMLDEAHERTIATDVLFGLLKKAVKRRP
DLKLIVTSATLDAEKFSKYFFGCPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHL
SEPPGDILLFLTGQEEIDTSCEILFERMKALGPKVPELIILPIYSALPSEVQSRVFEPTP
PGARKVVIATNVAETSLTIPGIYYVIDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRSG
RAGRTGPGKCYRLYTEAAYRNEMLPNSIPDIQRTNLAATILQLKAMGINDLLSFDFMDPP
PAQTMLTALESLYALSALDDEGLLTKLGRKMADFPMDPPMAKMLIASVELGCSEEILSVV
AMLSVQSVFYRPKEKQGQADSKKAKFHQPEGDHLTLLTVYNGWKAANFSNPWCYENFIQA
RSMRRAQDVRKQLLGIMDRYKHDILSSGRDYNLVRKAICSGYFRNAAKKDPQEGYKTLVE
GTPVYIHPSSALFNRNPEWLVYHELVLTTREYCHNVTAVEPKWLVEVAPQFFKVADANKI
SKRKRQEKIEPLYNKYEKPDEWRLSKIKRSARSSQTFG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcggacctctaccaactcgaattcctctcactcattaacaaaatcacccaa
gagctcgacaatcatgttggtgtcaatgacaaaactgttgccgagtttatagtcgctcta
catgaaagttcgggaaaaagtctggctaacttcaaggcgaagttacaggaaaatggactc
tcaccccctgactctttcgtcgaaactgtagaccgccttatcctaactttgcaccctaaa
tacaagaagcgccaggtgaacaagtctgctaaagctaaaggaaaagcaaaggcaaatgac
gacgaggtgtcggacctcgagctcaaaaggcgcatgtttcctggactagctatgaaggat
aaggaggtcccacccgcagtatctgaggatgacttcttgaaggagcttggtgatctggta
gcaggaaagaaaagagctgcgtcgcctaacatggatgcctcaccgaaacgaagaagacca
gacttgtcaccaccacgtcgaggtcgtagtcgaagtccacgccgtggagatggaagggtc
aatgataactttggagatggaagggatgcaagatatggggatggcagaagcgatagaaat
ggctatagaaatggaggccgccgtcaactcgatgaaagacccgttcttttcaaaatctat
gatggaaaggtatcgtctctgaaagaatttggcgcttttgtgacactggaaggcgtcgcg
ggtcgagtagaaggtatggtccacgtctctaatatacaagttggggccagagccaattct
gctgccgacttactgagtcgaggacagcatgttaaagtgaaggtcatgagcgttgcgggt
aaccgtattgggttatctatgaaggacgttgaccaagctactggcaaagatttaactccc
cacctacgcatcaagtcggaagctgagatggaagaagagcgcatccgggcggaacgcgct
gcctcatctggtgccaacgcagtaccattacgctccaaagaagatagtgctcctgtccga
tctgcaaagcgcttaacgtctcctgaacgatgggaaattaagcaactcattgcttccggc
gctattgatgcctcagaatatcccgatctggatgaagaatacaacaacccgatggcacat
gctgaaatagaggaagagctagacgtggagattcgcgaggatgagccgcccttccttgct
ggccaaacgaagcggactctggatcttagtcctgttaaaattgtcaaggctccagatgga
tcacttaacagggctgcacttgcaggcgcttcattggcaaaggagcgacgagaattgagg
cagcaagaggccaacgaagaggctgattcacaagcacgggatttcagtcaaccttggctt
gatcctatgtccaaagacagtgacaaaatttttgcccaagatctacggggcaacctgaaa
ggacaaaaggcaggagacgtcccggcgtggaaagagtcaagtttcaacaaaactacgaca
ttcgggcagattaccaatctcagtatacaagatcaacgaaaaagccttcctatctacaaa
ctccgcgaaccattactcaaagctatcgaagagcatcaagttcttatagtcgtcggcgac
actggatcagggaaaacaacgcagatggtacaatatctagcagaatcaggttatgctgac
cgagggcgcattggttgcacacaaccccgacgtgtagcagctatgtctgtggctaaacgt
gtctcggaagaagttggatgcagacttggtcaagaggtcgggtatacaatccgtttcgag
gattgcacaagccccgaaacgcgaatcaaatacatgacggatggtatgttgcagcgcgag
tgcctaattgaccctctgtgtagcagctactctgttatcatgttggacgaagctcatgaa
cggacaattgctaccgacgttttgttcggtcttttgaagaaggctgtaaagcgacgccct
gatcttaaactcattgttacatctgcaactcttgacgccgaaaagttctcaaaatacttc
tttggttgtcccatcttcacgatccctggtcgaacatatcctgttgagattctatacacc
aaggagcctgaaaccgattacttggatgcgtctctcatcaccgttatgcaaattcattta
tcagaacctccaggtgatattcttcttttcttgacaggtcaagaggaaatcgacacatcc
tgcgagatcctcttcgagcgtatgaaggcattaggccctaaagttccagagcttattatc
cttcccatttattccgcccttccgtccgaagtgcaatcgcgagtgtttgagcccacaccc
cctggtgcccgtaaagtcgtcattgccacgaacgttgccgagactagtttgacgattcca
ggtatctattatgtcatcgacccaggtttctcaaagcaaaacgcctatgaccctcgattg
ggaatggactcactggtggtcatgcccatctcgcaagctcaagcccgacaacgttcgggt
cgtgcaggacgtacaggccctggaaaatgttaccgcctctacacagaagccgcttacaga
aacgaaatgttgcccaactccattcccgatatacagcgtactaatctcgcggctacgatt
ctacaattgaaagccatgggcatcaatgacttgctcagtttcgattttatggatcctcct
cctgcgcagacaatgttaacagcgctcgaatctctttacgcgctgtccgctctggatgac
gagggtttgctaacgaaactagggcgcaagatggcagatttccctatggaccccccaatg
gcaaagatgttgattgcgtccgttgaattgggatgttcagaggagatattgtctgttgta
gcgatgctatccgtccaatctgtattttatagaccgaaggaaaaacaaggacaagctgac
tcaaagaaggccaagttccatcagcctgaaggagaccacttgacactgttgacggtatat
aatggatggaaggcagccaatttctcaaatccgtggtgttatgaaaacttcatccaggcc
agaagtatgcgaagggcgcaggatgtgcgcaaacaattgttgggtattatggaccgatat
aaacatgacatactttcttctggaagagattataaccttgtacgtaaagctatctgctct
ggatatttcaggaacgcggccaaaaaagaccctcaagagggttacaagacgcttgtcgag
ggaacaccggtttatatccatccatcatcggcattgttcaaccgtaacccggaatggctc
gtgtaccacgaattagttctgacgactcgcgagtattgtcataacgtcacagctgtcgaa
cccaaatggctcgtggaggtggcacctcagttcttcaaggtcgctgacgccaacaagatc
agtaaacggaagagacaggagaagatcgagccgttgtacaacaagtacgagaagccggac
gagtggcggttgtccaagatcaagaggagtgcgcgctcgagtcaaacgtttggttaa
DBGET
integrated database retrieval system
