KEGG   Psilocybe cubensis (magic mushroom): JR316_0000606
Entry
JR316_0000606     CDS       T08288                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03030  DNA replication
pcub03410  Base excision repair
pcub03420  Nucleotide excision repair
pcub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JR316_0000606
   03410 Base excision repair
    JR316_0000606
   03420 Nucleotide excision repair
    JR316_0000606
   03430 Mismatch repair
    JR316_0000606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcub03032]
    JR316_0000606
   03036 Chromosome and associated proteins [BR:pcub03036]
    JR316_0000606
   03400 DNA repair and recombination proteins [BR:pcub03400]
    JR316_0000606
DNA replication proteins [BR:pcub03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    JR316_0000606
  DNA Replication Termination Factors
   ELG1-RFC complex
    JR316_0000606
Chromosome and associated proteins [BR:pcub03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    JR316_0000606
DNA repair and recombination proteins [BR:pcub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     JR316_0000606
  Check point factors
   HRAD17(Rad24)-RFC complex
    JR316_0000606
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 AAA_14 RCF1-5-like_lid AAA_16 nSTAND3 AAA_3 RuvB_N Viral_helicase1 Mg_chelatase Gp44_lid MeaB nSTAND_NTPase5 AAA_assoc_2 Rad17 RNA_helicase NTPase_1 AAA_19 SRP54 ATPase_2 AAA_11 ABC_tran DNAX_ATPase_lid KTI12
Other DBs
NCBI-GeneID: 71966927
NCBI-ProteinID: XP_047754166
LinkDB
Position
1:complement(<1939691..>1941037)
AA seq 332 aa
MNKAADVPYELPWVEKYRPLLLDDIVGNQDTIERLKIIARDGNCPHIIISGLPGIGKTTS
IHCLAHQLLGDAYKEGVLELNASDERGIDVVRSKIKAFAQKKVTLPPGRHKIVILDEADS
MTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLKDQEILKRLLEI
CEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPVIIQA
TIRACLKGDVDTAVDRLNELWTQGYSAVDIVVTIFRVVKTFDEMPEYTKLEYIKEIGFTH
MRILEGVGTLVQLAGLAARLCKVHLKPELFAV
NT seq 999 nt   +upstreamnt  +downstreamnt
atgaacaaggcggcagatgtaccttacgagcttccttgggtcgaaaaataccggcctctg
ctacttgacgatattgtaggcaaccaggacacgattgaacggttgaaaatcattgcccgg
gatggaaattgtccccatatcatcatctcaggtcttccaggtattgggaaaacgacaagt
attcactgtctagcccaccagcttctcggtgacgcgtataaagagggagtgctggaattg
aacgcgtctgacgaacgtggcatcgatgtggtccggagcaaaatcaaggcatttgcccaa
aagaaagtgacgctcccgccaggtcggcataaaattgtcattttggacgaggcggacagc
atgacaccgggtgctcaacaagcgctacgtcgtacgatggaaatattctccaataccacc
cgcttctgtcttgcatgcaacatgagcaacaaaatcatcgagcctatacaaagtcgatgt
gccatcctgagatatgccaaactgaaagaccaagaaatattgaaacgcttgctggagatt
tgcgaaatggagaaagtcgaatacaacgatgacggcctgactgctttgattttcacgtca
gaaggtgatatgcggcaagcgatcaacaacctgcaatcgacgcattctggctttggcttc
gtctctggagacaacgtgtttaaagtctgcgatcagccgcatcccgttatcatacaggcc
accattcgggcttgcctgaaaggcgacgttgacaccgctgtggataggttgaatgagcta
tggacacaaggatatagtgctgtggacattgttgtcaccattttccgggttgtgaagaca
tttgatgaaatgcccgaatacaccaagcttgagtacatcaaggaaatcggctttacacac
atgagaattctggagggtgtggggacacttgtccagcttgcaggactcgctgctcggctg
tgtaaagtgcacctaaaacccgagctctttgccgtttga

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