Psilocybe cubensis (magic mushroom): JR316_0000606
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Entry
JR316_0000606 CDS
T08288
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03030
DNA replication
pcub03410
Base excision repair
pcub03420
Nucleotide excision repair
pcub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JR316_0000606
03410 Base excision repair
JR316_0000606
03420 Nucleotide excision repair
JR316_0000606
03430 Mismatch repair
JR316_0000606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcub03032
]
JR316_0000606
03036 Chromosome and associated proteins [BR:
pcub03036
]
JR316_0000606
03400 DNA repair and recombination proteins [BR:
pcub03400
]
JR316_0000606
DNA replication proteins [BR:
pcub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
JR316_0000606
DNA Replication Termination Factors
ELG1-RFC complex
JR316_0000606
Chromosome and associated proteins [BR:
pcub03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
JR316_0000606
DNA repair and recombination proteins [BR:
pcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
JR316_0000606
Check point factors
HRAD17(Rad24)-RFC complex
JR316_0000606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
AAA_22
AAA_14
RCF1-5-like_lid
AAA_16
nSTAND3
AAA_3
RuvB_N
Viral_helicase1
Mg_chelatase
Gp44_lid
MeaB
nSTAND_NTPase5
AAA_assoc_2
Rad17
RNA_helicase
NTPase_1
AAA_19
SRP54
ATPase_2
AAA_11
ABC_tran
DNAX_ATPase_lid
KTI12
Motif
Other DBs
NCBI-GeneID:
71966927
NCBI-ProteinID:
XP_047754166
LinkDB
All DBs
Position
1:complement(<1939691..>1941037)
Genome browser
AA seq
332 aa
AA seq
DB search
MNKAADVPYELPWVEKYRPLLLDDIVGNQDTIERLKIIARDGNCPHIIISGLPGIGKTTS
IHCLAHQLLGDAYKEGVLELNASDERGIDVVRSKIKAFAQKKVTLPPGRHKIVILDEADS
MTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLKDQEILKRLLEI
CEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPVIIQA
TIRACLKGDVDTAVDRLNELWTQGYSAVDIVVTIFRVVKTFDEMPEYTKLEYIKEIGFTH
MRILEGVGTLVQLAGLAARLCKVHLKPELFAV
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggcggcagatgtaccttacgagcttccttgggtcgaaaaataccggcctctg
ctacttgacgatattgtaggcaaccaggacacgattgaacggttgaaaatcattgcccgg
gatggaaattgtccccatatcatcatctcaggtcttccaggtattgggaaaacgacaagt
attcactgtctagcccaccagcttctcggtgacgcgtataaagagggagtgctggaattg
aacgcgtctgacgaacgtggcatcgatgtggtccggagcaaaatcaaggcatttgcccaa
aagaaagtgacgctcccgccaggtcggcataaaattgtcattttggacgaggcggacagc
atgacaccgggtgctcaacaagcgctacgtcgtacgatggaaatattctccaataccacc
cgcttctgtcttgcatgcaacatgagcaacaaaatcatcgagcctatacaaagtcgatgt
gccatcctgagatatgccaaactgaaagaccaagaaatattgaaacgcttgctggagatt
tgcgaaatggagaaagtcgaatacaacgatgacggcctgactgctttgattttcacgtca
gaaggtgatatgcggcaagcgatcaacaacctgcaatcgacgcattctggctttggcttc
gtctctggagacaacgtgtttaaagtctgcgatcagccgcatcccgttatcatacaggcc
accattcgggcttgcctgaaaggcgacgttgacaccgctgtggataggttgaatgagcta
tggacacaaggatatagtgctgtggacattgttgtcaccattttccgggttgtgaagaca
tttgatgaaatgcccgaatacaccaagcttgagtacatcaaggaaatcggctttacacac
atgagaattctggagggtgtggggacacttgtccagcttgcaggactcgctgctcggctg
tgtaaagtgcacctaaaacccgagctctttgccgtttga
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integrated database retrieval system