KEGG   Psilocybe cubensis (magic mushroom): JR316_0001015
Entry
JR316_0001015     CDS       T08288                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03030  DNA replication
pcub03410  Base excision repair
pcub03420  Nucleotide excision repair
pcub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JR316_0001015
   03410 Base excision repair
    JR316_0001015
   03420 Nucleotide excision repair
    JR316_0001015
   03430 Mismatch repair
    JR316_0001015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcub03032]
    JR316_0001015
   03400 DNA repair and recombination proteins [BR:pcub03400]
    JR316_0001015
Enzymes [BR:pcub01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JR316_0001015
    6.5.1.6  DNA ligase (ATP or NAD+)
     JR316_0001015
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     JR316_0001015
DNA replication proteins [BR:pcub03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    JR316_0001015
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     JR316_0001015
DNA repair and recombination proteins [BR:pcub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     JR316_0001015
   NER (nucleotide excision repair)
    Other NER factors
     JR316_0001015
   MMR (mismatch excision repair)
    Other MMR factors
     JR316_0001015
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C CENP-B_dimeris
Other DBs
NCBI-GeneID: 71967336
NCBI-ProteinID: XP_047754574
LinkDB
Position
1:complement(<3014370..>3017749)
AA seq 832 aa
MAGKFFDMPKSTKAAPPQQANLQEMWGKKKEPILSKLEPHAPKAEADAMVVDTPKEEKAE
SSKRKESGTPIASSPKIKKRRIIDSDDEDPNDIPPRSSPEPTLNGSTKSSSPIPDLSLPS
SKVRDKEQALTLSGTTTNGVSPPDDAESSSSEEDQGEEEAEDLEEEEDEEGLATEKAVNT
KSAQVALQKRDDVDIEGGWPVGKPVPYAALSKAFSLIEATTKRLEKNAILTSFLLLVIQR
SAKSDHASLLQAVYLCINRLCPDYVGIELGIGESLLIKAIAESTGRSLSVIKADLKKEGD
LGLVAMNSKNSQKTLFKPKPLTIPFVFSHLKEIALSSGHSSQAKKVSIITKLLAACQGVE
AKYIVRSLEGKLRIGNAERSVLVALSQAAVLAERERSNKKWSQDQLAARLEESANIMKSV
YSELPTYDLVIPALLEVGIDGLRQKCKLTPGVPLKPMLAKPTKAIGEVLDRFENKRFTCE
YKYDGERAQVHLLEDGSVKVFSRNSEDMSKKYPDLVDQLPKCIKETTKSFVFDAEAVAID
RTTGKLMPFQELSRRKRKDVKVEDITVQVSLFAFDLLYLNGEPLLQLPLYRRRELLREHF
VVVPGEFGFAKSSDSETTEEIQSFLEESVKDGCEGLMVKMLDTDASFYEPSRRSVNWLKL
KKDYLAGVGDSLDLVVVGGYYGKGKRTNVYGAFLLACYDSDSEEYQTICKIGTGFSEEVL
QTHYNTLKPLETTKPRGDIKVGGAKPDIWFEPKIVWEVLTADLSLSPIYTAAQGLVEDRG
ISLRFPRYLRIRDDKSADDATGPEQAKMYERQALAQPKGKKKKGGDADDEFW
NT seq 2499 nt   +upstreamnt  +downstreamnt
atggcaggtaaattcttcgatatgcctaaatccactaaagcggcgccaccccaacaagct
aatctgcaagaaatgtggggcaagaagaaggaacctatcctttctaaactcgaaccccac
gcgccaaaagcagaggccgacgcgatggtcgtggacactcccaaagaggagaaagctgag
agttcgaaacggaaagaaagtggcactccaattgccagctctcctaaaattaagaaacgc
aggattattgactcggacgacgaggaccctaatgatataccaccaaggtcttctcccgaa
cccaccttgaacggctctacaaaatcctcttcccctattcccgacctttctttaccgtcc
agcaaggtgcgagacaaggaacaggctttgacgctctctggaacgacgaccaacggagtg
tcaccccctgatgatgcagaatcatccagctccgaggaagaccaaggagaagaggaggcg
gaggacctggaggaagaagaggatgaagagggactcgcgactgagaaggcagtgaataca
aagagcgcgcaagttgccctgcaaaaacgggacgatgtggatatagaaggtggctggcct
gtcggaaaacctgttccgtatgccgctctttccaaggcattttctttgattgaagccact
acaaaacgcctagagaagaatgcaattcttacctcgttccttttgttagttatccagaga
agtgctaaaagcgaccacgcctcgctgcttcaagctgtttacctatgtatcaatcgatta
tgtccagactacgtgggtatcgagctcggtattggggagtctctcttgatcaaagctatt
gcggagtctactggacgaagtctaagcgtcatcaaggcagatttaaagaaagagggtgat
ctggggttggttgcaatgaactcaaaaaacagtcaaaagacactcttcaagccaaaaccc
ctaacgattcctttcgtattctcgcacttgaaggaaattgctttatcctctggacattca
tcacaagccaagaaagtttctataattacaaagctgctagctgcatgtcaaggtgtggaa
gcaaaatatattgttcgaagtctggaaggaaagctacggattggaaacgctgaaagatct
gtgctggttgctctttcgcaagcagcggtgttggccgaacgcgaacgatcaaacaagaaa
tggagtcaagatcagcttgctgcacgactagaagagagtgcaaatataatgaagtctgtt
tatagtgaattgccaacatatgatcttgttatacctgctcttctggaagttggaatcgat
ggccttcgacaaaaatgtaaacttacgccaggtgtaccccttaaacccatgctggccaaa
ccaacaaaagccattggagaagtactcgatcgatttgaaaacaaaagatttacttgcgaa
tacaaatatgatggcgaaagagctcaggtgcacttgcttgaagatggttcggtcaaagtg
tttagtcgaaactctgaagacatgagcaagaaatatcctgatttggtagaccaacttcca
aaatgcataaaagaaaccactaagtctttcgtgttcgacgctgaagcagttgccatcgat
cgtacaactggcaagctcatgcctttccaggaactgagcagaagaaagcgcaaagacgtc
aaggtcgaagatattacagtccaggtgtccctgtttgcattcgatctattatacctcaac
ggcgagcctctacttcaattacctttgtataggcgtcgtgagttgctgcgagagcatttc
gtagtcgttcccggagaatttggctttgcaaaatcttctgacagcgaaaccactgaagag
attcaatcttttctggaagagagtgtgaaggatggctgtgaaggacttatggtcaagatg
ttggataccgatgctagtttctatgaacccagtagacgaagtgttaactggctcaagctt
aagaaagattatctggcgggagttggtgattcactggacctagttgtggtcggaggctac
tatgggaaaggtaaacggacgaacgtttatggtgctttcctccttgcctgctatgatagc
gactcggaagaataccaaacaatttgcaagattgggacaggatttagcgaagaagtactg
caaactcactacaatactctcaaacccttagaaacgacgaaaccccgaggcgacatcaaa
gtgggaggtgcaaagcctgatatctggttcgaaccaaagattgtatgggaggtcttgact
gctgacctgagtctgagcccgatctataccgctgcacaaggactagtagaagaccgaggt
atatctctgcgctttccacggtacctccgaatccgggatgataaatcggccgatgatgca
actggaccggagcaggcaaagatgtacgaaagacaggcattggctcaacccaaaggcaag
aaaaagaaggggggagacgcagacgacgaattctggtga

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