Psilocybe cubensis (magic mushroom): JR316_0001328
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Entry
JR316_0001328 CDS
T08288
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03020
RNA polymerase
pcub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JR316_0001328
09124 Replication and repair
03420 Nucleotide excision repair
JR316_0001328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcub03021
]
JR316_0001328
03400 DNA repair and recombination proteins [BR:
pcub03400
]
JR316_0001328
Enzymes [BR:
pcub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JR316_0001328
Transcription machinery [BR:
pcub03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
JR316_0001328
DNA repair and recombination proteins [BR:
pcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
JR316_0001328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF5616
Motif
Other DBs
NCBI-GeneID:
71967649
NCBI-ProteinID:
XP_047754883
LinkDB
All DBs
Position
1:3907542..3913583
Genome browser
AA seq
1645 aa
AA seq
DB search
MEYWPTTLGCDAAGDSDPNFAEKIRHIRDPKARMAVVWSHCKTKNICEPDDPKEEGADPE
AEEGRKHGGCGHAQPQIRKEGLKLFVQYKKAKDDDDEVKSMQPDKRLITPSEVYTVFKKM
SDHDLHLLGLSEEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKAS
ANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKE
GRLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRTIAMNLTFPERVTPYNIAYLQELVR
NGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMS
MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP
QANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGTVPIPAILKPKPLWTG
KQILSLTIPRGINIHRSPDPKSSNPVFDDGVLIENGELIFGIVEKKTVGASQGGLVHVVF
REKGPEATRQLFTGLQMVVNYWLFHNGFSIGIGDTIADSATMSYITQTIAERKANVAQII
EDATHDRLKAAPGMTIRESFESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGS
FINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFF
FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD
GAFIEKQTIETFGLNDREFEHNYRVDVTDPAGGFIPGVLQVGIDDSSLELQVKLDEEFAR
LVEDRRLLREFVFPRVPNTQPHYLPVNLHRIVQNAIQIFHIDRRKPSDLDPAYIVDSIHE
LGKRLIVVRGDDNLSREGQENATLNFRMHLRATFASRRVLEKYHLTREAFDWVVGEVETK
FNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIK
TPSLTVYLEPQISRSADLAKQVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDSVFVES
FFAIPDEEIESKLHLQSPWLLRLELDRAKMIDRKLDMHYVAGRIAESFKTDLFVIWSEDN
SEKLVIRCRVLGSPDKEEDGLESVEEDIFLRQLENTMLNSVNLRGVKGINRVFLTEQDKV
VVAGDGTIRTDQQKEWVLETDGINLKTVMCIDGVDFTRTYSNSCVEIFNVLGIEAARAAI
LKELRGVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEI
LMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQSMLAAQ
IDGGMTPGQVAMTPYDTNSPMWQDGLFKGDPASASFSPLASNTGEDASSFQFLGYGQSPL
GAGGMSPGGVGYSPSSPNAYTPTSPSFVPQSPFSGATSPFGTSPYASSPMYDRGRGATSP
TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPASPSFSP
ASPRYSPISSTLLIAFSLPCSNVTILAQIFAYVPYAITFVAEIFTHLAGLLAAFSLFPCF
SRLQPYFSNALVALEPCAKPERQYA
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggaatattggccaaccacactcggctgtgacgcagctggagattcggaccccaatttt
gcggagaagattcgccacatccgtgatcccaaggcgcgcatggcagttgtctggtcgcac
tgcaaaacgaagaatatctgtgagcctgatgaccccaaagaagagggcgcagatccagag
gctgaagaagggaggaagcatggcggttgcggccatgcgcagcctcaaatcaggaaagag
ggcctcaagttgttcgttcaatacaagaaagcaaaggacgacgatgatgaggtcaagtcc
atgcagcctgacaagcggctcatcacaccgtccgaagtttatacagtgttcaagaagatg
tcggaccacgacctgcaccttctcgggctctccgaggagtatgcgagaccggagtggatg
atcctcacggttatgcccgttccgccgccgcccgttcgccccagtatcgccgtcgacggc
ggcgccatgcgcagcgaggacgatttgacgtacaaactgggcgacatcatcaaggcgtcg
gcgaacgtccgtcggtgcgagcaggagggcgccccggcgcatgtcatcactgaattcgag
cagcttctccagttccacgtggcgacgtacatggacaacgatattgctggtatcccgcag
gcgctgcaaaagtcgggtcgtcctgtcaaagctattcgtgcccgtctaaagggcaaggaa
ggccgtctgcgtggcaacttgatgggcaaacgtgtcgatttctccgcccgcacggttatc
acgggtgatccgaatctgcagctcgatgaagttggcgtgccgcggacgattgcgatgaat
ttgaccttcccagaaagagtgacgccgtataatatcgcgtatttgcaggagcttgtaagg
aatggcccgacgacgtatcctggtgcacgctatgttgtgcgagacacaggagagcgtatc
gatctgcggtataacaagcgtgcggatgcgtttttgcaatacggatggattgttgagcgc
catcttaaggatggagactatgtattgttcaatcgtcaaccttcgctgcacaaaatgagt
atgatgagtcatcgtgtaaagctcatgccttattcgaccttccgcctgaatctttcggta
acgccaccctacaacgccgatttcgacggcgacgagatgaacatgcacgtacctcagagc
gaggaaacgagggccgagttgagtcaaatcgcatgggtgcccagacagatcatttcgcct
caggcaaacaagcccgtcatgggcattgtgcaagataccctgtgcggtattcgaaaattc
acgttgcgtgataccttcctggactggaatcaagttcagaacatcctcttgtgggtgccc
gagtgggacggcacagtgcccatccctgccatccttaagccgaagcctctctggacagga
aagcagatcctgagcttgaccatccctcgggggatcaacattcatcgctcgcccgatccc
aagtcctctaatccggtgttcgacgacggtgtgctgattgagaacggagagctgatcttt
ggtatcgttgagaagaagacggttggcgcgtcgcagggcggtcttgtgcacgtagtgttc
cgcgagaagggtccggaggctactcgccaactatttacaggtctgcagatggtcgtgaac
tactggttattccacaatgggtttagcattggtattggtgacaccatcgctgattctgca
acgatgtcgtatattacgcagaccatcgcggagcgcaaggcgaacgttgcgcaaatcatc
gaggatgccacccacgatcgcttgaaggccgcgcctggtatgacgattcgtgaatcgttt
gagagtttggtcgagcgccaactcaacttggcccgtgacacgtctggtcaatacgcgcag
aagcacttgaaagaggacaacaacgtgaagcagatggtggtcgctggctcaaagggttct
ttcatcaacatctcgcagatgtcggtttgtgttgggcaacagtcagtcgagggtcggcgt
attccgtttgggttcaggcatcgcacgctgccgcatttcacaaaggacgatttcagcccc
gagtcgcgaggattcgttgagaattcgtatttgcgtgggttgacgccgcaagaattcttc
ttccatgccatggctggtcgtgagggtcttatcgatacggctgtcaagacggccgagacg
ggttacatccagcgccgtctcgtcaaggcgctcgaggacgttatggtgtgctacgacggc
acggtgcgaaactcgctcggtgatctgatccagttcgtgtatggcgaggacggtatggac
ggtgcattcattgagaagcagacgatcgagacctttggcctgaatgaccgcgagttcgag
cacaactaccgcgtggacgtcaccgacccagcgggcggattcatccccggcgtcctccag
gtcggcatcgacgacagctcgctggagctgcaggtcaaacttgacgaggagtttgcccgt
ttggttgaggacagacggctcctgagggagtttgtgtttcctcgggtgcccaacacgcaa
ccgcattatcttcctgttaacctccatcgtatcgtgcagaacgctattcagatcttccat
atcgaccgacgaaagcctagtgaccttgatcctgcctatattgtcgactctatccatgag
ctcggtaaacgtctgatcgtcgtgcgtggcgacgacaacctcagcagagaaggtcaagag
aacgccaccctcaactttaggatgcacctccgtgcaacgtttgcttctcgccgcgtgctg
gagaagtatcatttgacacgggaagcgttcgattgggtggtcggtgaagtcgaaaccaaa
ttcaatcagtccgttgtccaccccggagagatgtgtggtacgcttgccgcacagtccatt
ggagagccggcgacgcagatgactctcaacactttccattatgccggtgtgtcgagtaag
aacgttacgctcggtgtgccgcgtttgaaagaaattatcaatgtcgcgacgaacatcaag
acaccgtcgttgactgtataccttgaaccccagatatcccggtcggcagatttggccaag
caggtccagcaggagctggcgtatacctcgctgcggactgttaccgctgccgttgagatc
tggtacgaccccgatccatcatcaaccattattgaggaggattcggtgttcgttgaatcc
ttcttcgccattcctgatgaggaaatcgagagcaagctgcatttgcagtcaccctggctc
ctccgtctcgaactcgaccgtgcgaagatgatcgacaggaaactcgacatgcactacgtc
gctggccgcatcgccgagagcttcaagacagacctgttcgtcatctggagcgaagataac
tcggagaagttggtcattcgttgtcgtgtgttgggtagtccggataaggaggaggacggc
ttggagtcagttgaagaggacattttccttcgtcagcttgagaacacgatgttgaactct
gtcaacctgcgtggtgtcaagggtatcaaccgtgtcttcttgacggagcaggacaaggtc
gtcgtggcgggcgatggcaccatccgaacggaccagcagaaagagtgggtgctggaaacg
gatggcatcaatttgaagacggtgatgtgcattgacggtgtcgactttacgcggacatac
tcgaacagctgcgtggagatcttcaatgtgctgggtatcgaggcggcgcgtgcagcgatt
ctgaaagaacttcgtggagttatcgagtttgacggttcgtatgtcaactaccgtcatctt
gctttactctgcgaccttatgacccatcgtggaacactcatggctatcacacgccatggt
atcaatcgggcggatactggagcattgatgaggtgctcattcgaagagactgtcgaaatt
ctaatggaagctgcagccgtaggtgaaaaggatgactgccatggtattgcggagaacgta
atgttcggccagatggctcctatgggtactggcgcgtttgaggtggctctggatattgac
atgctgaaggatgctattgtggaccaccgtttgccggtgcagtcgatgctggctgcgcaa
atagacggtggaatgactcctggccaggtggccatgacaccttacgacactaattcaccg
atgtggcaagatgggctgttcaagggcgacccagcctcggcatctttctctcctcttgcc
tccaataccggcgaagacgcctcaagcttccagttccttggatatggacagagccctctc
ggcgctggaggaatgtctccgggtggtgtgggttacagccccagctcgccgaatgcgtac
acacccacttcaccaagcttcgtaccccaatcgccattcagcggcgcgacttccccgttc
ggcacctctccgtatgcgtcatcgcccatgtacgatcggggaagaggcgcgacgtcccca
acatactcgcctacttcccctgcgctcaacttgacatctccgggctattcgcccaccagc
ccacgatactcacctacttctccttcattctcacctacgtctcctcggtatagcccgcag
tcgccgtcgttcagcccgacgtcgcccaggtattcaccagcgagtccatcgttcagccct
gcgtcccccagatattcaccaatttcttctaccctcctcattgcgtttagcctcccctgc
tcaaatgtcaccatcctcgcccaaatattcgcctacgtcccctatgcaatcaccttcgtc
gccgaaatattcacccacctcgccggcttactcgccgcattctccttattcccctgcttc
tccaggttacagccctacttctccaacgccctggtcgccctcgagccctgcgcaaaacca
gaacggcaatacgcgtag
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