Psilocybe cubensis (magic mushroom): JR316_0001659
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Entry
JR316_0001659 CDS
T08288
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03440
Homologous recombination
pcub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JR316_0001659
03460 Fanconi anemia pathway
JR316_0001659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcub03032
]
JR316_0001659
03400 DNA repair and recombination proteins [BR:
pcub03400
]
JR316_0001659
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JR316_0001659
DNA replication proteins [BR:
pcub03032
]
Eukaryotic type
DNA Topoisomerases
JR316_0001659
DNA repair and recombination proteins [BR:
pcub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
JR316_0001659
FA (Fanconi anemia) pathway
JR316_0001659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
zf-CCHC
Zn_ribbon_GRF_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
71967980
NCBI-ProteinID:
XP_047752384
LinkDB
All DBs
Position
2:complement(458109..462286)
Genome browser
AA seq
1046 aa
AA seq
DB search
MRVLCVAEKPSISKAITQILSGGQYETRNTNSRFIKNYDFDYQPARAFFTVTAVIGHLTS
NDFPATHRQWHSCDPFELFDAPVETQVASDKKDIERNLQSEARRSDVLMIWTDCDREGEH
IGMEIARVCRQVKPGIRVKRARFSAIIAQQIHNAAQNPVELDRRQADAVEARIMLDLKVG
AAFTRLQTLILQGRVPQIEAEKSVVSYGPCQFPTLGFVVQRYQLVKNFRPEMFWYIYLSL
SRPGSEEETKFTWKRNHLFEEAVVAALFAMMGNSPAVVTKVTNKTTKKWKPLPLTTVELQ
KAGSRLLRLAPKKVLDVAEALYTSGFVSYPRTETDEFDPQFDHMSLINKQTVDPTWGQFA
TALTQGGYSSPRRGKNNDKAHPPIHPTAHAANLTGDEKRVYEYITRRYLACCSKDAEGWQ
TTVEVTCGGEDFSATGLVVKERNYLEVYVYDKWTGHHVPDFREGEEFQPTVCEIRQGETT
RPNYLTEADLVTLMDKNGIGTDATIAQHIETIVKRNYVIERFEGAVKYLVPSTLGIGLVE
GYNLIGLTKSVSKPQMRRETERRMVQVCEGTTTKNDMLTHSLDQYKEMFIIVRREFAKVS
DYLAGQGGAENGEGGRNGPGGHGGDGGGGRGGGGGGGGGGGGGGGSGRGGRGGNGAARGS
GRGQPSTRAARGSNGAGRGRGRGGAPNSGNMICIDDTDDDDDGFGSAPSRAVPKPRSTKA
QAAPSSSTAVASSSRQSAPLHITSSWSATTITPAPAVQPISRSSAGDGPQCECNIPAVQK
TVVRETASKGRQYWTCSQNGCGFFQWADDVPGASGSSSSSSGIPQKRTYSKTRDASTSEG
LPRQCACGEDAIILTVQKENENKGRKFWKCQRKEAPCDYFEWDDKPPKVGTFGSNGGTMP
SRTSSLNTSKASTTDCNQTGHWATSCPNSDSSSNSRSKSFGNSSYNKSSSATCFKCQKPG
HYSTSCPNDGSIGGGSKAQFSGQDSSGNECYKCGSAGHWSTHCPSGGSSSGSKRGSKRGR
GGSSTRGRRGRGGSKKKSAFAAADDY
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgagggtactatgcgtcgccgaaaaaccctcaatttcgaaggcgatcactcaaatattg
tccggcggccaatacgagactaggaatacgaattctagatttatcaagaattatgacttt
gactaccagcctgcaagagcattttttactgttacagcagtgataggtcacttaacatcc
aacgacttccccgccactcaccggcaatggcattcgtgtgatccgttcgaactattcgac
gcgccagtagaaactcaggtcgcgtcagataagaaggacatagagcgtaatcttcaatct
gaagcacgacggtcagacgtactcatgatatggacggattgcgatcgagaaggagagcat
attggcatggagattgcccgtgtttgtcgacaagtaaagcctggaattcgcgtaaagcgg
gcaagattcagtgctatcattgcacaacagatacacaatgctgcacaaaacccagtcgag
ttggatagacgtcaagcggatgcagtggaggctcgaataatgctggatttgaaggttgga
gcggcgtttaccagactacagacattaatcttgcaaggacgcgttcctcagattgaggca
gaaaagagcgtagtctcatatggaccttgccaattccctactctcggattcgtggtacaa
cgataccaactcgtcaagaactttcgccccgaaatgttctggtacatatacctgtccctt
tcacgaccagggagtgaagaagaaactaaattcacgtggaagcggaaccaccttttcgaa
gaggctgttgtcgcagcgcttttcgcgatgatgggcaactcgcccgccgttgttaccaaa
gtgacgaacaagacgacgaagaaatggaaacctcttcctctcaccactgttgagctgcag
aaagccggctcccgactgcttcgcctggctccaaagaaggtgttggatgtcgccgaggct
ctgtacacctctggtttcgtgtcgtatccaagaacagagacagacgaattcgatccacag
ttcgaccatatgtcgttgattaacaagcaaacagtggaccctacatggggacaatttgcc
acagcactgactcaaggcggatatagctcgccacggcgagggaagaacaacgacaaagca
caccctccaattcaccctactgcgcatgccgccaacctaaccggggacgaaaaacgcgtt
tatgagtacataaccagacgataccttgcttgctgctccaaggatgccgagggatggcaa
acaacagtggaggtcacttgtggtggggaggacttctctgccacgggcctggtcgtaaaa
gagcgaaactatctggaagtctatgtatatgataagtggactggacaccatgtgcctgat
tttagggagggagaagaattccagcctacagtatgtgagatcaggcagggggaaacgaca
aggccgaattatttgacggaagcagatttggttacgctcatggataagaatggcatcggc
acggacgcgacaattgctcaacacatcgaaaccattgtcaaacgaaactacgtcattgaa
cggtttgagggcgcagttaagtatctcgttccctcgacactcggaatagggctagtggaa
ggctacaatttaatcggcctgacaaagagcgtcagcaaaccacaaatgcgtcgtgagact
gaacgtaggatggttcaagtctgcgaaggaacgactaccaaaaatgacatgctaacacac
agcctcgaccagtacaaggaaatgttcatcatcgtgcggagagagtttgctaaagtgtct
gattatcttgctggtcaaggtggggctgagaatggggaaggtggaagaaatggtcctggc
gggcatgggggtgacggaggtggcggtcgagggggtggtggtggtggcggcggcggtggt
ggtggtggtggcggaagtggcagaggtggtagaggtggcaacggggctgcgcgtggtagt
ggcaggggtcaaccttcaactcgcgctgcacgcggaagcaatggcgcaggacggggccgc
ggaagaggcggggcgccaaactctggcaatatgatttgcattgacgacactgacgatgac
gacgacggtttcggatctgccccatctagagctgtgccaaaacccaggtcaacaaaagcg
caagctgcacctagttcttctaccgccgttgcgtcgagttctcggcagagcgctccactt
cacataacatcttcgtggtccgcaaccactatcacccctgctcctgctgtacaaccaatc
tcgaggtcatcagccggcgacggaccccagtgcgaatgcaatataccagctgtccagaag
accgtagtccgtgaaaccgcttccaaaggaaggcaatattggacctgctctcagaatgga
tgtggatttttccagtgggcagacgatgtccctggagctagtggcagcagtagcagcagt
tcgggtatacctcaaaagcgaacatattccaagacgagagacgcgtcgaccagtgaaggc
ctgccgcgtcagtgtgcgtgtggagaggatgcgatcattctaacggtacaaaaggaaaat
gaaaacaaaggccgcaagttttggaaatgtcagaggaaagaagcaccatgcgattatttt
gagtgggacgacaaaccaccgaaagttgggacatttggttcgaatggtgggactatgccc
tcgagaacgtcgtctttgaacacgagtaaagcaagtacaacggattgcaaccaaaccggc
cactgggcaacttcctgtccaaacagcgacagttcaagcaactcgcggtcaaagagcttc
ggcaacagctcctacaacaaatcttccagcgcgacatgcttcaagtgtcagaagccaggc
cattacagcacatcttgtccgaatgatgggtccatcggcggtgggtctaaagctcagttt
agtggacaggattcatccggaaacgagtgttataaatgtggtagcgctggtcattggagt
acacattgtccctctggtggtagctccagcggatctaagcgaggttctaaacgtggtcgt
ggtggttcttcgactagaggcagaagaggacgaggaggaagcaaaaagaaatctgctttt
gcggcggctgacgattattaa
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