Psilocybe cubensis (magic mushroom): JR316_0002352
Help
Entry
JR316_0002352 CDS
T08288
Name
(RefSeq) General transcription and DNA repair factor IIH subunit ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03022
Basal transcription factors
pcub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JR316_0002352
09124 Replication and repair
03420 Nucleotide excision repair
JR316_0002352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcub03021
]
JR316_0002352
03400 DNA repair and recombination proteins [BR:
pcub03400
]
JR316_0002352
Transcription machinery [BR:
pcub03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JR316_0002352
DNA repair and recombination proteins [BR:
pcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JR316_0002352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
DZR_2
MRP-S24
Motif
Other DBs
NCBI-GeneID:
71968673
NCBI-ProteinID:
XP_047753069
LinkDB
All DBs
Position
2:2605062..2606500
Genome browser
AA seq
378 aa
AA seq
DB search
MAPRQNDQMDVDSDSDISIDLEHHNKSKGKGKTKVGDKRKQDKGKGKAKDTQAYTWEASF
TRSWETVQEDEAGTLQTTVEDLLARGRRRRLLAPAAAIRRTIIRHLILILDLSSAMMDRD
MRPTRFDLMLQYAREFITEWFDQNPLGQIGVVGMRAGLGERVGEMSGNPQEVLKSIADRH
KLEPAGEPSLQNAIEMARGSMNHLPTHSSREILLVFGSLTTCDPGNIHDTLDECIKNKVR
ISIVAIAAEMKICRDLCDKTGGQFGVAMNEGHFKDLLFELVPPPAQRAISRAAGAGATNP
AADLMMMGFPTRLPDASPPSLCVCHSEMKSQGFLCPRCMSKVCDVPTDCDICGLMIVSSP
HLARSYHHLFPVKPYDAV
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggcccccagacagaacgaccagatggacgtcgactcagactcagacatttccatagat
ttagaacatcacaataagtctaaaggaaaaggtaaaacaaaggtcggagataaaagaaag
caggataaaggaaagggaaaagctaaggacacgcaagcttatacgtgggaggcatcgttc
actcggtcgtgggaaaccgtacaggaggacgaggctgggactttgcaaacaactgttgaa
gaccttttggcaagaggaagaagaagaaggctcttagcgcctgcagccgcgatacggcgc
actattattcggcacctcattctaattcttgatctatcttctgccatgatggatagggat
atgaggccaactcgctttgatcttatgcttcaatatgcacgcgaattcataacagaatgg
tttgatcaaaaccctttaggccaaattggagtagtggggatgagggcaggtttaggggag
cgagtaggagaaatgtcaggtaacccccaggaagtgcttaaatcaatagcagatcgacat
aagcttgagccagcaggcgaacctagtcttcagaatgccattgaaatggcacggggcagt
atgaatcatctaccaacgcattcatcgcgagaaatccttctagtttttggatcattgact
acatgcgaccctggcaatattcatgacactttggatgaatgcatcaagaacaaagttcgc
atttcaattgtggctatagcggcagagatgaaaatatgccgcgacctttgtgataaaaca
ggcggccaattcggggtagccatgaatgaaggacatttcaaagaccttctttttgagtta
gttcccccacctgcccagcgtgccattagtcgcgccgcgggtgctggtgccaccaaccct
gccgccgacctcatgatgatgggcttccccacacgtctgcctgatgcatctccacccagc
ctgtgtgtctgtcactctgaaatgaaaagtcaaggatttttgtgtccacgatgcatgtcc
aaagtatgcgatgtcccaacggattgtgacatctgcgggctcatgattgtcagctcgcct
catttggctcgaagttatcatcatctttttcctgtcaaaccatacgatgctgtgtaa
DBGET
integrated database retrieval system
