Psilocybe cubensis (magic mushroom): JR316_0003763
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Entry
JR316_0003763 CDS
T08288
Name
(RefSeq) DNA-dependent ATPase of the nucleotide excision repair factor 4 complex
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03022
Basal transcription factors
pcub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JR316_0003763
09124 Replication and repair
03420 Nucleotide excision repair
JR316_0003763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcub03021
]
JR316_0003763
03036 Chromosome and associated proteins [BR:
pcub03036
]
JR316_0003763
03400 DNA repair and recombination proteins [BR:
pcub03400
]
JR316_0003763
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
JR316_0003763
Transcription machinery [BR:
pcub03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JR316_0003763
Chromosome and associated proteins [BR:
pcub03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
JR316_0003763
DNA repair and recombination proteins [BR:
pcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JR316_0003763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
nSTAND3
DUF5788
Motif
Other DBs
NCBI-GeneID:
71970084
NCBI-ProteinID:
XP_047751907
LinkDB
All DBs
Position
3:complement(2871621..2875016)
Genome browser
AA seq
787 aa
AA seq
DB search
MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ
QFFPTKRKLIYCSRTVPEIEKALAELKRLMEYRTKSAETEEQKTKETNFMGLGLTSRKNL
CINPQVAKEKKGKVVDARCRDLTNSSVCQKGRENPGSVELCDWHENLGKLEPGHLIPGGI
WTLADVLQYGRDKGICPYFAVRRMMPFIDVIIYSFHYLLDPKVAEQVSKEMSKDAIVVFD
EAHNIGSLLPDNVCIESLSIDLTRPMLEAAGRSVTKLSDKIEEVKTTDVAKLQDEYARLV
EGLQESISDENDTDAVMGNPGMNIDSSTMKAEHFVAFLKRFVEYIKTRMRVLHVVAETPL
SFLQHLKDITYIERRPLRFCAERLQSLIRTLELNRLDEFASLQKVASFATLVATYEKGFL
LILEPFETDNATVPNPVFHFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTP
VVQETYPMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVPDGI
VAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRGAV
LLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESRILKARLEYLRDAYRIRESEFLGFD
AMRNAAQCVGRVLRGKTDWGLMIFADKRFARADKRAKLPRWINQYITETASNLSTDMAIT
LSKLFMRTISQNPNENQTGVSLWTLEDIEKAQAKQKELALDAEKDHDDDYGDGGLSDAAL
MDFDLDV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcttcattgataacctaccgataatcttcccatacgaccgaatctatcctgaa
caatatgcgtacatgtgcgatctcaaaagaacccttgacgccactgggcattgtgtactc
gaaatgccttctggaacagggaaaactgtttctttactttccttaattgtatcctatcaa
cagttttttccaaccaaacgaaagcttatttactgctctcgtaccgttccagaaatcgag
aaagctcttgcggagctgaaaaggctaatggagtacagaaccaaatctgcagagacagag
gagcagaaaaccaaagagacgaatttcatggggcttggtcttactagccgaaagaattta
tgtatcaatcctcaggtagcgaaagagaagaaagggaaagtggtcgatgcacgctgtcgg
gacttgacaaattcctctgtttgccaaaaaggaagggaaaatcctggatctgtagagctt
tgtgattggcacgagaatctagggaaactggaacctgggcaccttatacctggtggtatc
tggaccctagctgatgtcctgcaatacggtcgtgacaaaggcatttgtccatacttcgct
gttcgacggatgatgccttttatcgatgtcatcatatattcgtttcattatcttctggat
cccaaggttgctgaacaagtttctaaagaaatgtccaaggatgctatcgtggtgttcgat
gaagcccataacattggaagtttgctcccagacaatgtttgtatcgaatctctcagcatc
gacctcacaagacctatgctggaagctgctggtagaagtgtcaccaaactgtctgacaaa
attgaggaggttaagacaactgacgttgccaaactgcaagatgagtatgcgaggctggtc
gaaggattgcaggagtctatctctgatgaaaacgacaccgacgccgtcatgggcaaccca
ggcatgaacattgactcttcaaccatgaaggccgaacattttgtcgccttcttgaagaga
tttgtggagtatattaagactcgcatgagggtccttcacgttgtggcggaaacgccgctg
tctttcttgcaacatcttaaggatataacttacatagaacggcggccgctacggttttgt
gctgaacggctccaatctctaatacggacactggaattaaaccggcttgatgaatttgcc
agcttacagaaggtcgccagtttcgcaactttggttgctacttatgaaaaagggtttctt
ctgatactggaacccttcgagacggataatgctaccgtcccgaatcccgtgtttcatttc
acctgtcttgatccgtcacttgccataaaacctgtttttgagcgcttcagtagtgtggtc
attacttcggggactatatcaccgctggatatgtaccccaagatgctgcagtttacgcct
gttgttcaagagacataccccatgacgttgacgaggaatgcgtttttgcccttggtcatc
acgaggggtagtgaccaagttgctatcagctccagatttgaagtcagaaatgaccctgct
gtcgttcgcaacttcggaagcattttgattgagtatagcaagatagtgccagacggaatc
gtagccttcttccctagctatttgtacatggagtccatagttgcagcatggaacgatatg
ggcatactgaatgaagtttggaagcacaaattaatttttgtggagacacctgacgcaaat
gaaacaagtatcgcattagagaattaccggagggcctgtgataatggccgtggtgcagtt
ttgctttctgtcgctcgaggaaaggtctctgaaggcattgattttgatcataactacggc
cgagcggtcatcatgtttggagttccttatcagtacactgaaagtcgcatcctgaaggcc
cgtctggaatatcttcgcgacgcataccgcattcgtgaatccgagtttttgggcttcgat
gccatgcgaaatgctgcacaatgcgtcggtcgggtattgagaggaaaaacggactgggga
ttaatgattttcgcggacaagcgcttcgcaagagcagataagagagccaagcttcctcgg
tggatcaaccaatatattacggagacggcctctaacttgtcgacggacatggccattaca
ctatcaaaattgttcatgcgcaccatttctcagaatccaaacgaaaatcaaactggtgta
tcattgtggacgttggaagatattgagaaagcacaagcaaaacaaaaggaactcgcgtta
gatgctgagaaggatcacgatgacgattacggagatgggggactcagcgacgcggcactt
atggacttcgatcttgatgtctga
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