KEGG   Psilocybe cubensis (magic mushroom): JR316_0004346
Entry
JR316_0004346     CDS       T08288                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    JR316_0004346
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcub03041]
    JR316_0004346
Spliceosome [BR:pcub03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    JR316_0004346
 Complex C
   U5 SnRNP specific factors
    JR316_0004346
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_EML Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st eIF2A DUF7165 TibC_1st Beta-prop_NUP159_NUP214 PQQ_3
Other DBs
NCBI-GeneID: 71970667
NCBI-ProteinID: XP_047749873
LinkDB
Position
4:748068..749532
AA seq 370 aa
MSKRGLSPPPSGGIVIKRAKASPPPSNQIAISSAGDDRNKGLIRTVQRTSNLDAPIISLA
GAHSGEITSCRFDPTGQNIAACSTDRSISFWRTYAPNTNYGLLSSHAKAPILDIQWSLFS
PLIYSVSADHTLCMTDVTTGQRTRKIRAHREIINTVDRTMASGSGVELLATGSDDGTVKI
WEGGEEAGKTAVSTFDIGCPVTSVCWSADGNSLYIGAIDNEIHVYDLRKGEQVSSLLGLT
DTPTSLSLSPNGNFLLSPSLSSQTIVWDVRPFSPTPSRIHRVLHGAPAGFENTLLRGAWS
RDDGGKRAAVGGADRAVCIWDVDSAKILYKLPGHKGTVTSVDFHPKEPIILTGSKDGTML
LGEIEVGLDV
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgtcgaaaagaggtctctccccgccgccctctggggggatagttataaaacgtgccaaa
gcttctcctccaccatcaaaccaaattgctatttcttctgcgggtgatgatagaaataag
ggacttattcgtactgtgcagcggactagtaatttggatgcacctattatcagcttagca
ggagcacattcgggagaaattacaagttgtaggtttgaccctactggacaaaatattgca
gcttgttcaacagatagaagtatctccttctggcgaacttatgcacccaacactaactac
ggcctcctctcaagccacgcaaaagctcccattctcgacattcaatggtccctgttctcc
ccactcatttactccgtctctgcagaccacactctctgtatgaccgacgtaacgactggc
cagcgcacccgcaaaattcgtgcccaccgcgagatcatcaacacggttgatcgcaccatg
gccagtgggtctggcgtcgaactccttgctacgggatcagacgatgggacggtcaagatt
tgggagggtggggaagaagctggaaagacagcagtttccacgtttgatattggatgtccg
gtcacaagcgtttgctggagcgcagatgggaacagtctatacatcggcgctatcgacaat
gaaattcacgtctatgatctccgcaaaggtgaacaggtgtcatcactcctgggactgaca
gacactccgacatccctgtccctttcaccgaacggaaatttcctcctctcaccttcactc
tcatctcagacaattgtttgggatgttcgccccttttctcctacaccatcgcggatacac
cgcgtcctgcatggcgccccggctggcttcgaaaataccttattgcgaggtgcttggagc
agggacgacggcggaaaacgcgcggctgttggtggtgccgacagggcagtgtgcatctgg
gacgtagacagtgccaaaattctctacaagttgccaggtcataaggggaccgtcacgtct
gttgatttccatcctaaagaacctatcatcctgacgggaagcaaggacggaacaatgttg
ttaggcgaaatcgaagttggccttgacgtataa

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