Psilocybe cubensis (magic mushroom): JR316_0004527
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Entry
JR316_0004527 CDS
T08288
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03008
Ribosome biogenesis in eukaryotes
pcub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
JR316_0004527
09123 Folding, sorting and degradation
03018 RNA degradation
JR316_0004527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcub03021
]
JR316_0004527
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0004527
03009 Ribosome biogenesis [BR:
pcub03009
]
JR316_0004527
03016 Transfer RNA biogenesis [BR:
pcub03016
]
JR316_0004527
Transcription machinery [BR:
pcub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
JR316_0004527
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
JR316_0004527
Ribosome biogenesis [BR:
pcub03009
]
Eukaryotic type
Pre-60S particles
RNases
JR316_0004527
Transfer RNA biogenesis [BR:
pcub03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
JR316_0004527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_3
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
71970848
NCBI-ProteinID:
XP_047750052
LinkDB
All DBs
Position
4:<1288190..>1292582
Genome browser
AA seq
1102 aa
AA seq
DB search
MGVPALFRWLSKKYPKIIYPVVEEEDTKIVAENGEQVIVPVNMASANPNGMEFDNLYLDM
NGIVHPCTHPEGKPAPETEEEMMLEIFSYTERVVNMIRPRKLLFMAIDGVAPRAKMNQQR
SRRFRSSQEAKEKEEARKESVLLWEAMGKEVSEDEKNKVSWDSNAITPGTPFMDLLASSL
RYWVVQKMNTDPGWKGIQVLISDAGVPGEGEHKIMDFIRRQRSNPGHDPNTKHVIYGLDA
DLIMLALATHEPYFRVLREDVFANDTSPTACRMCGQEGHYAAQCTGTKAEIQKKPPAEKK
PFIFLDVAILREYLEVELDVPTTSFPFSLEEAIDDWVLLIFFVGNDFLPHLPSLEIREGA
IDTLLKIWKQELPRMGGYLTHHGELELSRAQIILEGLAKREDEIFRRRREAEERQDQNAK
RRKLEQQNRNGISSGPSQTMALKTSSTNVMTNGSSKSTLHPSLPQRPTSNHDFGANADSI
GLGAAPTPESIQNIPTAAQALAGSNRDVVANRRAIRMANMSAAEVLKAELSGLVPLKPPA
SSKPSAMPPLPVSNDVSVQETSDIPGLGANRLKGSSSEAAPPAVRQETPLESDADADGEP
DPDTKMSSDETTLDGNVSQSSVGAKRKFEEGPGSDDITDDVVVVEEDDEDAPAVPALKVN
ADGTVEQEDTVKLWEPGYKERYYRQKFGVELTDTQFKKDITKAYIEGLSWVLRYYYQGTP
SWQWFYPYHFAPFAADFEDVDKMDIKFELGQPFKPFEQLMGVFPAASRQHIPEVFHRFMI
DEDSPIIDFYPPSFEIDMNGKKMAWQGVALLPFIDQKRLLDAMAIEYPNLSEDEIRRNRW
GNNVIFASVDHPIYPFYEKLYGKRKNDEKRPVAAVVAGVVEDLTVVGPVEVTVLTAAMTN
FNPGRTPMVSRMEMIGQDQEAEEVTITPTAMEILAAMVVEALADMEVEALAVTVVEILAA
TGAMEAGMEADTEDEVAMEMEVRINKIHTLLALPIHHSHRTIRTVILVGEARMVDMVANL
IHPVPTTVVTMAETVEATMGNHQHKILMALTAAGEVIIMVVMGGTVQDNILLLHQEVEHH
TTWLLVEEAVLGDLVIGAMLWS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagctctttttcgatggttgagcaagaagtacccgaaaatcatctatcca
gtggtcgaagaagaagatactaaaatcgtagccgaaaatggcgaacaagtaattgttcct
gtaaatatggcatcagccaaccctaatggcatggaattcgacaatctctacctagacatg
aatggtattgtgcatccctgtacacatcccgaagggaagcccgctccggaaactgaagag
gagatgatgttggaaattttcagctacactgagcgagtggtcaatatgatacgaccccgc
aaattgttattcatggccatcgatggcgttgcacctcgcgccaagatgaatcagcaacgg
tctcgtcggttccgttcctcgcaggaagcaaaggaaaaagaagaagcgaggaaagaatcg
gttctattgtgggaagcaatgggtaaggaagtatctgaagatgaaaaaaacaaagtttca
tgggactcgaatgctattaccccgggaaccccttttatggatctcctggcgtcctctttg
cgttattgggttgttcaaaaaatgaacactgaccctggttggaaaggcattcaagttctc
atctcagatgctggagttcctggagaaggagagcataaaataatggatttcattagacgc
cagaggagtaatcctggccatgacccgaacacaaaacacgtaatctatggattggatgca
gatcttattatgcttgccctggcgactcatgaaccttattttagggtcttgcgagaggac
gtttttgctaacgatactagtcctactgcgtgtcgaatgtgcggccaagaaggccactat
gctgcacaatgtactggcacaaaggccgagatacagaaaaaacccccggcggaaaagaaa
ccctttatttttctcgatgtggctatcttgcgcgaataccttgaagtggagctcgatgtt
ccgactacatcattcccattttccctggaagaagcaattgatgactgggttctcttgata
ttctttgtcggcaatgatttcctcccacatcttccctcccttgagattcgagaaggcgcc
attgatacactcttgaagatatggaaacaagaactcccgagaatgggtggttatctgact
caccacggtgaacttgagttatcacgtgcacaaatcattcttgagggtcttgccaaacga
gaagatgaaattttccgtcgtaggcgtgaagctgaagaacgccaggaccagaacgccaag
cgtcgtaagttagaacaacaaaacaggaatggtatttcctctgggccctctcagaccatg
gcgctgaaaacatcttctaccaatgtgatgaccaacgggtcgtctaaatccacgttgcat
ccttctcttccccaacgacctacttcaaatcacgatttcggtgcaaatgctgattctatc
ggtcttggtgcagctccaactcctgaatctattcagaatattccaactgctgctcaggcc
cttgcaggctctaatcgtgatgttgttgccaatcgccgtgctattagaatggcaaacatg
agtgctgccgaagttttaaaagcagaactatcaggtcttgtaccattgaaaccccctgca
tcttcaaaaccctctgccatgcctccccttccggtatcaaatgacgtatcagtacaagaa
acttcagacataccagggcttggagcaaacagacttaagggcagttcctctgaggccgct
ccacccgctgttcgacaggaaacccctcttgaaagtgatgcagacgccgatggcgagccc
gacccagacacaaaaatgtccagcgatgaaacaacactggacggcaacgtatcacagagc
tcagtaggagctaaacggaaattcgaagagggacccgggtcggatgatatcaccgacgat
gttgttgttgttgaggaagatgacgaagatgcacctgctgttccagcgctcaaagtcaac
gccgatggcactgtggaacaggaagacactgtaaaattatgggaaccaggttacaaagag
agatattacagacagaaatttggagtggagcttacagacacccagttcaagaaagatatc
actaaagcctatattgaaggtctctcatgggttcttcgttactactaccaagggacacca
tcatggcaatggttttatccgtatcattttgcgccgtttgccgcagattttgaagatgtt
gataaaatggatatcaaatttgaacttggccagcctttcaaaccttttgaacaattaatg
ggcgttttcccagcggccagtcgacaacacatcccagaggtgttccatcgatttatgatc
gatgaagactctcctattattgatttctatccaccttctttcgagattgatatgaatggc
aagaaaatggcatggcaaggtgtcgcactattgcctttcatcgaccaaaaacgccttctg
gatgctatggccatcgaatacccgaatctatctgaggatgaaattcgtagaaatcgttgg
ggcaacaatgttatttttgcttctgtggaccacccgatatatcccttctacgaaaagctt
tacgggaagcgcaagaacgacgagaaacgacccgtagcggcggtcgtggccggggtcgtg
gaggatttgaccgtggtggggccggtagaggtaacggttttgaccgccgcaatgaccaat
ttcaatcccggccgaacacctatggtcagtcgtatggaaatgatcgggcaggaccaggag
gcagaggaggtaactataacacctacggcaatggaaatcctggcggctatggtggtggaa
gctctggcggatatggaggtggaagctctggcagttacggtggtggaaattctggcggct
acgggggctatggaggcgggaatggaggcggatacggaggacgaggtggctatggaaatg
gaagttcgtatcaacaaaattcataccctgctcgctcttcctatccatcacagccaccga
acaattcgtacggtaatcctggtgggcgaggcgcgtatggtggatatggtggcgaatctt
attcatccagtgccgactacggtggttacaatggcggaaaccgtggaggctacaatgggc
aaccaccagcacaaaattcttatggctcttacggcagcgggggaggtaataattatggtg
gttatggggggtacggttcaggacaacatcctgctcctccatcaagaggtggagcaccat
acaacttggctgctcgtggaagaggccgtacttggtgatcttgtaatcggggcaatgctt
tggtcatga
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integrated database retrieval system
