KEGG   Psilocybe cubensis (magic mushroom): JR316_0004958
Entry
JR316_0004958     CDS       T08288                                 
Name
(RefSeq) DNA-directed RNA polymerase core subunit rpc10
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03020  RNA polymerase
pcub03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JR316_0004958
  09124 Replication and repair
   03420 Nucleotide excision repair
    JR316_0004958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcub03021]
    JR316_0004958
   03400 DNA repair and recombination proteins [BR:pcub03400]
    JR316_0004958
Transcription machinery [BR:pcub03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     JR316_0004958
  RNA polymerase III system
   RNA polymerase III
     JR316_0004958
  RNA polymerase I system
   RNA polymerase I
     JR316_0004958
DNA repair and recombination proteins [BR:pcub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      JR316_0004958
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 DUF7577 DUF7130 Zn_Ribbon_TF DmmA-like_C DUF7129 zf-C3HC Zn_ribbon_8 Zn_ribbon_10 DZR MCM_OB DZR_2 HypA zf-ChsH2 Zn_ribbon_DZR_6 Zn_ribbon_13 DUF5816 DUF6083 Zn_ribbon_LysW
Other DBs
NCBI-GeneID: 71971279
NCBI-ProteinID: XP_047750483
LinkDB
Position
4:complement(2364521..2364848)
AA seq 70 aa
MNQQQGAPPNANAGGGGPGYQQPRTEMEYLCADCGAKNEIRARDPIRCRECGHRIFYKKR
TKRMVQFEAR
NT seq 213 nt   +upstreamnt  +downstreamnt
atgaatcaacaacaaggtgcccctcccaacgccaacgctggtggtggtggtccaggatac
cagcaaccccggacggaaatggaatacctctgcgcagactgcggcgccaaaaacgagatc
agagctcgggatcccatccgttgcagagagtgcggacatcgtattttctataagaaaagg
acgaagagaatggtccagtttgaggctcgctga

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