KEGG   Psilocybe cubensis (magic mushroom): JR316_0005764
Entry
JR316_0005764     CDS       T08288                                 
Name
(RefSeq) Replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03030  DNA replication
pcub03410  Base excision repair
pcub03420  Nucleotide excision repair
pcub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JR316_0005764
   03410 Base excision repair
    JR316_0005764
   03420 Nucleotide excision repair
    JR316_0005764
   03430 Mismatch repair
    JR316_0005764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcub03032]
    JR316_0005764
   03036 Chromosome and associated proteins [BR:pcub03036]
    JR316_0005764
   03400 DNA repair and recombination proteins [BR:pcub03400]
    JR316_0005764
DNA replication proteins [BR:pcub03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    JR316_0005764
  DNA Replication Termination Factors
   ELG1-RFC complex
    JR316_0005764
Chromosome and associated proteins [BR:pcub03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    JR316_0005764
DNA repair and recombination proteins [BR:pcub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     JR316_0005764
  Check point factors
   HRAD17(Rad24)-RFC complex
    JR316_0005764
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA AAA_lid_RFC1 AAA_22 Rad17 Rep_fac_C Hda_lid AAA_assoc_2
Other DBs
NCBI-GeneID: 71972085
NCBI-ProteinID: XP_047748867
LinkDB
Position
5:complement(902692..904289)
AA seq 356 aa
MSLWVDQYRPRSLDALSYHHGLSERLKALAASGDFPHMLFYGPSGAGKKTRISCTLKQLF
GSGVEKLKIDQRVFLSPSKRKIEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQQ
VDMGAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL
LMRVAAPSEDEMLAVLQSVARRVGFDLPPEAGTKIVEDSNGNLRKALLVLEALKMQSPDL
TGPLSIAKPDWEVYCHKVADLIVSEQSPARVMEVRTKFYELLSHCIPPTVILKTVAERVV
DKVDESLKADIMHWAAFYEVRMRNGNKKIYHLEAWVVKVMSLYKQFFYNIDMSEFD
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgtctttgtgggtcgatcagtacaggccaaggtccttggatgcactcagctatcaccac
ggtctctcagagcgtctgaaagctttggctgcgtcaggcgactttccacatatgcttttc
tatggtccttcaggcgccggaaagaagacacgtatcagttgtacgctaaagcaactattt
ggttctggggtggagaagcttaaaattgaccaacgagtgtttctctcaccttcgaagcgg
aagattgaaataaacattgtacagagcaactatcacatcgagattacaccgagcgaggct
ggcaactatgaccgagttgtaattcaggaattgctcaaagaaatcgcacagacacaacaa
gtggacatgggtgcaaagcaacgtttcaaagtggtcatcatcaacgaagctgattcactc
tcaagagatgcccaggctgctcttcgccgaacaatggagaagtacatgtcaaacatgagg
attatactttgtgcgaatagcacaagtcgtctaatcgccccaatcaaaagtcgttgtttg
ctcatgcgcgtagctgctcccagtgaagatgagatgctagcagtactgcagagcgtggcc
agacgcgttggcttcgatcttccccctgaggccggtaccaaaattgtggaagattccaac
ggaaatctaagaaaagctcttctcgtacttgaagctctgaagatgcagtcaccagatttg
actggacctctatcaatagccaagcctgattgggaagtgtattgtcacaaagtggcggat
ttgatcgtctcagagcagtccccggccagggttatggaagtgagaacgaaattttatgaa
ttgttgagccattgtatacccccgactgtcattctaaagactgtggccgaaagagttgtt
gacaaagttgatgaatctttgaaagcagatatcatgcattgggcagcgttttacgaagtc
cgtatgcgaaatggaaataagaaaatatatcacctcgaggcttgggtggtaaaagtgatg
agtttgtacaagcaatttttttataatatcgatatgtcggaattcgactaa

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