Psilocybe cubensis (magic mushroom): JR316_0006780
Help
Entry
JR316_0006780 CDS
T08288
Name
(RefSeq) CCR4-NOT transcription complex subunit 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JR316_0006780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0006780
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
JR316_0006780
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
JR316_0006780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
71973101
NCBI-ProteinID:
XP_047747807
LinkDB
All DBs
Position
6:<854988..>856335
Genome browser
AA seq
345 aa
AA seq
DB search
MTGIRDVWAPNLEAEMRVIRDLIEHFPYVAMDTEFPGVVARPIGNFKTSSDYHYQTMRCN
VDLLKIIQVGITLANEDGEFPQEISTWQFNFRFSLTDDMFTPDSVEQLQKAGIDFGRHEE
FGILPNDFAELMITSGMVLSHDTKWISFHSGYDFGYFVKLLTAESLPTNEDAFFSLLKIW
FPTVYDIKFLMRASKALKGGLQEVADDLGVMRISTGQHEQTGSDSLLTASTFFKMREIYF
DDHIDDAEYSGKLYGLGQTFSMSNGLTDPARGGVTIAEREDRGSVRDAHNQTPGPNNGSS
QQTQPTSMTLGPMTAGIQSAMTPGGYGSMNNGPQAYMRTMVGGGR
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgacgggaatacgcgacgtatgggcgcctaatctagaggcggaaatgagggtcatccgc
gatctgatagaacatttcccgtatgtcgcaatggacaccgaatttccgggagtcgtcgct
cgtccaataggaaactttaagacttcctcggactaccattatcaaactatgcggtgtaat
gttgacctgctcaagatcattcaagttggtatcacgctggcgaacgaggacggggagttt
ccacaggaaatctcaacatggcagtttaattttcgattcagtttgactgatgatatgttc
acgcctgactccgtggaacaattgcaaaaagctggtatcgatttcggacgccatgaggaa
tttgggatccttcccaatgatttcgccgaacttatgattacgtcgggcatggtgctatcg
cacgatacaaaatggatatctttccacagcggctatgatttcggatatttcgtgaaactt
ttgacagcggaatctctaccgacaaacgaagatgccttcttttcacttctcaaaatatgg
tttcccaccgtttacgacatcaagttcctgatgagggcgtctaaggccctcaaaggtggc
ttgcaagaagttgcagacgacctcggcgtcatgcgcatcagcacgggtcagcatgagcaa
actggctctgactctctcctgacagcttcaactttcttcaagatgcgagaaatttacttc
gatgatcacattgatgacgcagagtattcagggaagctatacggtcttggacaaaccttc
tcgatgtcaaatgggttgactgatcccgcaagaggaggggttacgatcgccgagagagaa
gacagaggttcagtaagggacgctcacaaccaaacacctggacccaacaatggtagcagc
cagcaaacacagccgacgtcgatgacgttgggtcctatgacagctggtatacaatctgcc
atgacacctggtggatatggctccatgaacaatggaccacaagcatacatgcggacgatg
gtagggggagggcgttaa
DBGET
integrated database retrieval system
