Psilocybe cubensis (magic mushroom): JR316_0010711
Help
Entry
JR316_0010711 CDS
T08288
Name
(RefSeq) Exosome complex exonuclease dis3
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JR316_0010711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0010711
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
JR316_0010711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
71977031
NCBI-ProteinID:
XP_047744421
LinkDB
All DBs
Position
10:complement(<1375141..>1379092)
Genome browser
AA seq
989 aa
AA seq
DB search
MVEIKVLKRPRSEAVVTQRKFFKKTARGKVIKVLRERYLRDDVACGIEGCRECDQGVLPA
SGDKNHPAFPNGHFILPDTNVFLSQMDLVESPLFNPPIILLQTVLEEVRHRSLPLYNRLK
ALTKADDKKIWIFYNEYRSETAIIREEGETPNDRNDRGIRKATAWYNEHIKLSRPPIRGQ
PTPQIPTVVLMTEDSDNRQKAEKAGIPASSVRKYVQSMKNSTQLLDLLSAEGSSEIEPTK
AVAGRQSLYPEYLPTSTLLAGVKAGELHQGHFNANQYNYLEGSVHVPAFTKPVLLVGREN
MNRAVDGDIVVVEVFEEKEWKAPGDEVVDQDSTLKNDDAEDSADEGDVEDHEVLVKESKF
VETTEIRGHDKQPTGRIVGIIKRNWRAYVCHIDSTSLTSSNATSLSQQTVFATPVSRLLP
RIRLRTRQAPSLIGQKILVTIDRWDVTSRYPEGHFVRSLGKVESKEAEQESLLLEFEVPY
RPFGKAILDCLPELGDQWVVPPKSDSSPEWRDREDFRDLIICSIDPPNCQDIDDALHARP
LPNGNIEAGVHIADVSHFVHADTPMDSEAASRGTTVYLVDKRIDMLPSLLGTNLCSLRPF
VERLAFSAIWEMTPDAEIVNVRFTKSVIASKAAFTYEEAQIRKDDPHRQDELTQGIRLLN
SLAQKLKAKRMAAGALNLASPEVKIQLDSSESSDPIDVEQKELRETNSLVEEFMLLANIS
VAKKIEETFPQTAVLRRHLPPPRTNFEKLQDILMKRKGMPLDVSSSGALAASLDQCVDIN
EPAFNTLVRIMATRCMLSAEYFCSGSVGKDTFGHYGLASPIYTHFTSPIRRYADVLAHRQ
LSAAIGYSPLHASLHSKQHVERVLDVVNRRHRMAQMAGRASVEFYVGLALKARGEREKKN
SAEVIEEAFVIRTFRNGLGVFVSKLGIEGLVMFKKDMQFDAENYTITVGTTTLAVFDKVK
VRIEVEKDRNTQRGRVKMSLVHPIDSADL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaatcaaggtgttgaagagaccaaggtctgaagctgtggttacacagcggaag
tttttcaagaaaaccgcacgcggaaaagtcattaaagtcctccgcgaacgatatctacga
gatgacgtagcatgcggaattgaaggatgtcgcgaatgcgaccaaggtgtccttcctgcc
tctggcgataaaaaccacccagcatttcccaatggtcatttcattttgccggatacgaat
gtgttcctatcacagatggacctcgtcgaatctcctctttttaatccacccattatcctg
ttacaaactgtgctcgaggaagtccgacatcgttctctgccattgtataaccgtctcaag
gctctaacaaaagcggatgacaagaaaatttggatcttttacaatgaatatcgatccgaa
acagcaatcatcagagaagaaggcgaaacaccgaacgacagaaatgaccgaggtatccga
aaagccactgcatggtataatgaacacatcaagcttagtcgaccgcctattcggggccaa
cctactcctcaaataccgactgtagtattgatgacagaagattcagacaatcgacagaag
gcggagaaagctggaattcctgcttcttcagtgcgaaaatatgttcaaagcatgaaaaat
tcaacgcaattattggatcttctgtccgcagaaggttcaagcgaaattgagccaacgaaa
gctgtggcaggtcgccaatccttgtatccggagtatcttccgacatccacattattggca
ggggtcaaagcaggagagctgcatcaagggcatttcaatgcaaatcaatataattatttg
gaaggcagcgtgcatgttcctgcattcaccaaaccagtattgcttgttggtcgagaaaat
atgaacagagcagtcgacggagatatcgtagttgtggaggttttcgaggagaaagaatgg
aaggctccgggggatgaggtagtggatcaagactcaactctaaaaaatgatgatgcagaa
gattcggctgacgaaggggatgttgaagaccatgaagttctcgtaaaggaatccaaattt
gtcgagaccacagaaatcagaggccacgataagcaaccgacaggacggatcgtgggcatt
atcaagcgaaactggcgagcttatgtgtgccacatcgacagtacctctctaacatcttcc
aatgcaacctctttgtctcaacaaaccgtcttcgccacccctgtctctcgtcttcttccg
cgcatccgcctacgtacccgtcaagcaccctcgttgattgggcaaaaaattctagttaca
atcgaccgttgggacgtcacttcacgatatcctgagggtcactttgtacgttcgttggga
aaagttgaaagcaaggaagccgaacaagagagcctgttgctggaattcgaagtgccgtac
cggcctttcggaaaggcaattttggattgcttaccagaattaggagaccaatgggtggtt
cctcctaaaagcgattctagcccagagtggagggacagagaagacttcagagatttaatt
atctgcagtattgatcctccgaactgtcaggacattgacgatgccttgcacgccagaccg
ttgccaaacgggaatatcgaagctggtgtccatatcgcggatgtatcgcatttcgtgcat
gctgacactcccatggacagcgaggctgcgtcaagaggaacaactgtttatcttgtagat
aagaggattgacatgttgccatcacttcttgggacaaatttgtgctcgttacgacctttt
gttgaacgccttgcgttttcggctatctgggaaatgacgcctgatgcagaaattgtgaac
gtcaggtttacaaagtctgttatcgcgtcgaaggctgcattcacttatgaggaggctcag
attcgtaaagacgatccccatcgtcaagacgagctcactcaaggcattcgtctccttaac
tcgcttgcacaaaagttgaaagcgaaacgcatggcggcgggtgctctcaatctggcttcg
cctgaggtcaaaatccaactagacagctcagagtcatcggatcccatcgacgttgagcaa
aaagaactcagagaaacaaacagccttgtagaagaattcatgttgcttgccaatattagt
gtcgccaaaaaaatagaagaaacgttccctcagactgccgtcctaaggcgacatttgcca
cctccacgaactaacttcgagaagcttcaagatattctgatgaagagaaagggtatgcct
ctcgatgtctcgagttcaggtgcacttgctgcgtctctggatcaatgtgttgacatcaat
gaaccagccttcaacaccctggtccgtatcatggctactagatgtatgttatctgcagaa
tatttctgctctggaagtgttggaaaggacacttttggacattacggtctcgcaagccca
atttacacgcattttacgagtccaatccgacgttatgcagatgtattagcccatcgtcaa
ctgtcagctgccattggctactcgccgctacatgcctcgctacactcaaagcaacacgtt
gaacgcgtgttggacgtggtgaatcgcagacatcgtatggcacagatggcagggcgtgcc
agcgtggaattttatgttggattggcgctcaaggctcgtggagagagggagaagaaaaat
tcagccgaggtgattgaagaggcattcgtgatcagaacgttcaggaatgggcttggtgtc
tttgtgtcaaagttgggtattgagggtttggtgatgttcaagaaggatatgcaattcgat
gccgagaattatacgatcactgtgggcacgacaaccctcgccgtgtttgacaaggtaaag
gttcgcatagaagtagaaaaagacaggaatacacagaggggacgggtcaagatgagcttg
gtgcatcccattgattctgcggacctgtaa
DBGET
integrated database retrieval system
