Psilocybe cubensis (magic mushroom): JR316_0012623
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Entry
JR316_0012623 CDS
T08288
Name
(RefSeq) DEAH-box ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0012623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcub03041
]
JR316_0012623
03009 Ribosome biogenesis [BR:
pcub03009
]
JR316_0012623
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JR316_0012623
Spliceosome [BR:
pcub03041
]
Complex A
U2 snRNP components
U2 related factors
JR316_0012623
Complex B
JR316_0012623
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
JR316_0012623
Ribosome biogenesis [BR:
pcub03009
]
Eukaryotic type
90S particles
Helicases
JR316_0012623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
SRP54
AAA_19
nSTAND3
ResIII
ATPase
T2SSE
Flavi_DEAD
ABC_tran
AAA_7
Motif
Other DBs
NCBI-GeneID:
71978943
NCBI-ProteinID:
XP_047743133
LinkDB
All DBs
Position
12:2138637..2141589
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AA seq
775 aa
AA seq
DB search
MSESKPRDNPYLAHLPPSQRGVGTGSKEITKDPLFGFLPRKVKGDQVRKAMDGDVNPFTK
QPHSGQYKKILETRKKLPVFAQMDEFLKIFSENQIIVMVGETGSGKTTQIPQFVAYSDLP
HTKGKMVACTQPRRVAAMSVAKRVADEMDVQLGRHVGYSIRFEDMTEAGTTFLKYMTDGM
LLREAMNDPSLERYSTIILDEAHERTLATDILMGLLKGIAKKRKDLKIIIMSATLDALKF
QKYFSLRSDATAPLFKVPGRTHPVEVFYTQEPEPDYVEAAIRTVLMIHRAEDPGDILLFL
TGEEEIEDACRKIKLEADDLLNQDPSSVGPLSCIPLYSSLPPQQQQRIFDAAPPPITKDG
PPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG
RAGRTRPGKCFRLYTEKDFMKELEEQTHPEILRSNLSNTVLELMKLGIKDLVSFDYVDAP
APETLMRALELLNYLAALDDDGNITPLGGIMAEFPLDPQLAKLLIVSPEFKCSNELLTIT
AMMSVPNVWLRPNNQRREADAAKAALTVPDGDHLTLLNVYNQYVLNKHDKNWCWTNYLSQ
RALQQADNVRAQLQRTMERFDIDLISLSDEKKLFVNIRQALVCGFFMQVAHKEGEKGNYL
TVKDNQASQPSLISVVALHPSCGLDTQPEWVIFNEFVLTTRPYIRTVSEVKAEWLIEFAA
NYFDLSTFPDGETKRALQRAWNKRAGRGDKKSSKGSRQDGSDERLAKKRRTDGRD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatcaaaacctcgagataatccatatctcgctcaccttcctccttctcagcgt
ggtgtcgggacgggctcgaaggagataacaaaggatcctctgtttggatttttgccgcgc
aaggttaaaggagaccaagtgcgaaaggcaatggatggagatgtcaaccctttcacgaaa
cagcctcattctggacagtacaagaagatcttggaaacacggaagaaattgccagtgttc
gcgcagatggacgagtttctgaagatcttcagcgaaaaccagattatagtcatggtcgga
gagactggatcagggaaaacgacacaaattccacagtttgtcgcgtactcggacctgcct
catacgaaaggaaagatggttgcgtgtacccagccgagacgagtggctgcgatgtcagtc
gctaaacgtgtagcagatgagatggacgtgcagctgggacgccatgttggttattcgatt
cgttttgaggacatgacggaagctggcacaacattcctcaaatacatgactgacggtatg
cttctccgtgaagccatgaacgaccccagtctcgaacgctactcgaccatcatcctcgac
gaagcccacgaacgaacactcgccaccgatatccttatgggtctcttgaaaggcatcgca
aagaagagaaaggatctcaagatcatcatcatgtctgccacgcttgacgccctcaaattc
caaaaatacttcagcctgcggtcggatgccactgcgcccttgttcaaagtacccggtcgt
acccatcccgtcgaggtgttctatacccaagagcccgagcccgattacgtcgaggctgcc
atccgcacggtgctgatgatccaccgagccgaggatcccggcgatattcttctcttcctc
actggagaggaagaaattgaagatgcttgcagaaaaatcaaactagaagcagacgacctg
ctcaaccaagatccatcgtctgtcggcccactgtcatgtatacccctctattcgtccctc
cctccacagcagcaacaacgtatcttcgacgctgcccctcctcccattacaaaagatggc
cctcccggccgcaaagtcgttgtctccaccaacatcgccgaaacatcgctaacaatagat
ggcatcgtgtacgtcgtcgaccccggattctcgaagcagaaggtgtacaacccgcgcatt
cgtgtggagagtttgctcgttagcccaatctccaaagcttcagctcagcaacgtgcagga
cgtgcaggacgtacgagacctggaaaatgctttaggttgtatacggagaaggacttcatg
aaggagttggaggagcaaacacatcctgagatcttgcgcagtaatttgagcaacacggtt
ctggaactcatgaagcttggaatcaaggatttggtttcctttgactatgtcgatgcgcct
gctcctgagactttaatgcgtgctctagagttgctaaattaccttgccgctctggacgat
gacggtaatatcacgccattaggtggtatcatggctgaattccctcttgatcctcaactg
gcgaaactgttgattgtcagccccgagttcaagtgcagtaatgaattgctcacaatcact
gcgatgatgtcagtgcccaacgtgtggcttcgtcctaataaccaaagacgggaggccgac
gctgcgaaggctgcattgaccgttcccgatggcgaccatctgaccctattgaacgtttac
aaccaatatgtcctcaacaaacacgataaaaattggtgttggacaaattatctttcccaa
cgtgccctccagcaagcggacaacgttcgcgcacagcttcagcgaaccatggagcgcttc
gatatcgacctcatttctctctccgacgaaaagaagctgttcgtcaacattcgtcaagct
ctcgtctgtgggttctttatgcaggtcgcacataaagagggagagaagggcaactatttg
accgtgaaagataaccaggcaagtcaaccctcgcttatatccgttgtagcgttgcaccca
tcgtgcggtctagacacccagcctgaatgggtcatcttcaatgaattcgtgttgacgacg
cggccctatatccgcactgtatcggaagtgaaagctgaatggctaatcgagtttgctgcc
aactacttcgatctgtcgacattcccggatggagaaacgaagcgggcgttgcagcgggcc
tggaataagagggcaggccgaggtgataagaagtccagcaaggggtcgagacaggatggg
tcggacgagaggttggccaaaaagaggaggacggatggcagggactag
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