Pseudomonas cucumis: PSH97_02520
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Entry
PSH97_02520 CDS
T09632
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH97_02520 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcuc03019
]
PSH97_02520 (rnr)
03016 Transfer RNA biogenesis [BR:
pcuc03016
]
PSH97_02520 (rnr)
Enzymes [BR:
pcuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSH97_02520 (rnr)
Messenger RNA biogenesis [BR:
pcuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSH97_02520 (rnr)
Transfer RNA biogenesis [BR:
pcuc03016
]
Prokaryotic type
tRNA degradation factors
PSH97_02520 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
WLG85422
UniProt:
A0AA49M3I3
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All DBs
Position
583022..585652
Genome browser
AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPANREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGMIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEARQLRGEYTDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMDTPHVRRAGAMIIPKARIYPYDEAILEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGIETAAPAAKTAVESAPAK
TGRRPAKEKAVEAYRPSDAAAKNAELRKSRELKQALLSEAKSGGKAASGGKTGRSAPDKA
SGGKPAKPSKHRKGPPKAGSAPAARSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatccttcagcaccttgctgatcgaggttcgcctgctaac
cgcgagcagctggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgt
cgccgcctgcgcgccatggagcgcgacgctcaactcatctatacccgtcgcggcacttat
gcgccggtggacaagctcgacctgatcctgggccgcatcagcggtcaccgtgacggcttt
ggcttcctggtcccggacgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgacggcgaccgtgccctggcccgtgtttccggcctcgaccgtcgcggtcgc
cgcgaaggcatgatcgttgaagtggtgtcccgtgcccacgagaccatcgtcggtcgttac
ttcgaagagggcggtatcggttttgtggtcgcggacaatccgaagatccagcaagaagtg
ctggtgactccgggccgcaacgccaacgcccagatcggtcagttcgtcgaagtgaagatc
actcactggccgacgccacgcttccagccgcaaggcgacgtggtcgaagtcgtgggtaac
tacatggcgccgggcatggaaatcgatgtcgccctgcgcacctacgatattcctcacgtc
tggccagaagcggtgctcaaagaagccgccaagctcaagccggaagtcgaagagaaggac
aaagagaagcgcattgacctgcgccatctgccgttcgtgactatcgatggcgaagatgca
cgggacttcgatgacgcggtctactgcgaagccaagccgggcaaactgcgcctgttctcc
ggtggctggaagttgtacgtggcgatcgccgacgtttccagctacgtgaaaatcggttca
gcgctggataacgaatcccaggtgcgtggcaactcggtgtacttccccgagcgtgtcgtg
ccgatgctgcctgagcaattgtccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtctgcgagatgactatctccaaatccggcgagatgaccgactactgcttc
tacgaagcggtaattcactcccacgctcgcctgacctataacaaggtcagcgccatgctg
gagacgccgaaagccaccgaagcgcgtcagcttcgtggtgaatacaccgacgtcctgccg
cacctcaagcagttgtatgcgctgtacaaggttctgctggcggcccgtcacgtgcgcggc
gcgatcgatttcgaaacgcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccgttcgcaacgacgcccacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaaaaagcacgaaatccctgcgttgtaccgcgtc
cacgacggcccgccaccggagcgtctggaaaaactgcgcgccttccttggcgagctcggc
ctgtccctgcacaaaggcaaggacggtccgtcgccgaaggattaccaggctttgctggca
agcatcaaggaccgtccggatttccatctgatccagaccgtcatgctgcgttcgttgagc
caggcggtgtacagcgccgataatcagggccacttcggcctgaattacgaagcctatacc
cacttcacttcgccgattcgccgctacccggacttgctcacgcaccgggcgatccgcagc
gtcatccattcgaaaatggacaccccgcacgttcgccgtgccggcgcgatgatcattcca
aaagcgcgcatctacccgtacgacgaagcgatcctggagcaactcggcgagcagtgctcg
atgagcgaacgccgtgccgacgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgtgtgggcgaatcgttcccgggtgtgatcaccgccgtgaccggtttc
ggcctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggcgattactaccacttcgatcctgtacaccaccgcctcgccggtgagcgtaccggt
cgcagcttccgccttggcgataccgttgaagtgcgcgtcatgcgcgtcgacctcgacgag
cgcaagattgacttcgagatggctgaaaaaaccatcagcgcgccgattggtcgcaaaaaa
cgtggaattgaaaccgctgctccggccgccaaaacagctgtggagtcggcaccggcgaaa
accggtcgtcgtcctgccaaggaaaaggctgtcgaagcctatcgtccgagtgatgcagcg
gcaaaaaatgccgagttgcgcaaaagtcgtgaactgaaacaggcgttgttgtctgaagcg
aaaagcggcggtaaagcggcgtctgggggaaagaccgggcggtcggcgcctgacaaggcc
tccggcggcaagccagcaaaaccgagcaaacaccgtaaaggcccgccaaaagcgggttcc
gctccagccgccagaagcggcggggcgcgtaaacctaaggccaagtcatga
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