Pseudomonas cucumis: PSH97_05375
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Entry
PSH97_05375 CDS
T09632
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03030
DNA replication
pcuc03430
Mismatch repair
pcuc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSH97_05375 (dnaE)
03430 Mismatch repair
PSH97_05375 (dnaE)
03440 Homologous recombination
PSH97_05375 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcuc03032
]
PSH97_05375 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcuc03400
]
PSH97_05375 (dnaE)
Enzymes [BR:
pcuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSH97_05375 (dnaE)
DNA replication proteins [BR:
pcuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSH97_05375 (dnaE)
DNA repair and recombination proteins [BR:
pcuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSH97_05375 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WLG85959
LinkDB
All DBs
Position
1234111..1237632
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV
AEASEGLIMLSAAKEGEIGLAMLSGNPDEAENLAREWMAVFPDRFYLEVQRTNRPNDEEQ
LHGAVALAAKIGAPLVATNDVRFIRQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYT
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEIRTMKLRLDAPDVNTSEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDES
KAYQANIDRNRAVLLNAMEGAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLHTKDLKGDQLRWLGDLFKRHRGACPITMEYTSPDAKAL
LQFGETWRIDPADALIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatattccctggtcgacggtctg
gtgcggatcaaaccgctggtcaagaccctggtcggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgctccctggtcaaattctataaagctgccatgggggcgggg
atcaagccgatctgcggcgccgacctgtggctgtcgaacaaggatccggacaacgccttg
agccggatcagcctgctggcgatgaacgccgtgggctatcgcaacctcaccgaactgatt
tcccgtggcttcatcgacggccagcgcaatggctcggtgatcatcgagcgcgagtgggtg
gctgaagccagcgaaggcttgatcatgctgtcggcggcgaaagagggcgagattggtctg
gccatgctcagcggcaacccggacgaagccgaaaacctggcacgtgaatggatggcggtg
ttcccggaccgtttctatctggaagtccagcgtaccaaccgccccaatgacgaagaacaa
ctgcacggcgccgtggcgctggcggcgaaaatcggtgcgccgctggtggcgaccaacgac
gtgcgtttcatcaggcaggaagacttcgaagcccacgaaacccgcgtttgcatcggtgaa
ggccgcgccctcgacgatccccggcgttcgaagaattacagcgaccagcaatacctcaaa
agcgctgaggaaatggccgagctgttcagcgacttgcccgaggcgctggaaaacacggtc
gagatcgccaagcgctgcaacatcgaggtgaaactgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgatgagtatttccgcaaggtttccttcgacggtctg
gaagagcgcctcagcgttctgctgcccaaggacaccaccgaagactacgaagccaagcgt
caggtctacgtcgaccggttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggta
ggtccggggcgtgggtcgggtgcggggtcgttggtggcctacgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttccttaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgaccgggtcatcgattacgtg
gccgagaagtacggccgtaacgcggttagccagatcatcaccttcggttccatggcggcg
aaagcggtggtccgtgacgtggcgcgggtacagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgattccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaggctgcggaaatctgggagatggcg
cgcaagctcgaaggcgttgtgcgtaacgtcggcaagcacgccggtggtgtggtgatcgcg
ccgaccaagctgactgacttctcgccgatttattgcgacgaagcgggcgatggcctggta
acccagttcgacaaggacgacgtcgaggctgccggtctggtgaagttcgacttcctgggt
ctgcggaccctgacggtcatcgactgggcgctgaaaaccatcaaccgcgatcgcgccaag
gtcaacgagccgccgctggatatcgcctttatcccgctggacgacaaaccgacttacacg
ctgctgcaaaaagctgaaaccactgcggtgttccagctcgagtcgcgcggcatgaaagag
ctgatcaaaaagctcaagcctgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggtccgttgcaatcaggcatggttgacgactttatcaaccgtaagcacggtcgc
gcggagctcgcgtacccgcactcggattaccagtacgaaggcctcaagccagttctggcg
ccgacttacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
ggttatacccttggcggtgcagacatgctgcgtcgagccatgggtaagaaaaagcccgaa
gaaatggccaagcaacgtggcggtttcattgaggggtgcgccaccaacaatatcgacgcc
gacctggccggtaacatcttcgacctggtagaaaagttcgccggttacggcttcaacaaa
tcccactccgcagcctatggcctggtgtcgtaccagaccgcgtggctgaaagcccactac
ccggcgccgttcatggctgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaaattcgcaccatgaagctgcgtctcgacgcgccggatgtgaatact
tcggagttcaagttcacggtgaatgacgaaggccgcattatttatggcctcggcgcgatc
aagggtgtgggcgaagggccggtggaagcgatcaccgaggcgcgtcaggacggaccgttc
aaggatctgttcgatttctgcgcccgtgtcgatctcaaacggatcaacaagcgcacgctg
gatggcttgatccgtagcggcgccctggatcgtcttggtccgtacttccatgatgagtcg
aaagcctatcaggccaacatcgaccgcaaccgggcggtgttgctgaacgccatggaaggg
gcgatcaaggctgccgaacaaaccgctcgcacccacgacagcggccatgccgacctgttt
ggcgggctgttcgtcgaggaagatgccgatgtctacgccaatcaccgcaaagctaaagaa
ctgaccctcaaggagcgcctgaaaggggagaaagacaccctgggcctgtacctgaccggt
cacccgattgacgagtacgaaggcgagattcgtcgcttcgcccgtcagcgcatcatcgac
ctgaagccggctcgcgatacccagacggtcgcgggcatgatcatcgccctgcgagtgatg
aagaacaaaaagggcgacaagatgggtttcatcaccctcgacgaccgctccgggcggatc
gaagcctcactgttcgccgacgcgttccattctgcgcagtcgctgttgcagaccgacgcg
atggtggtggtcgaaggcgaagtcagcaatgacgacttctctggcggcctgcggctgcgg
gtcaagcgggtgatgagcatggaagatgcgcgcaccaacctggccgaaagcctgcgcctg
aaattgcacaccaaggatttgaagggcgatcagctacgctggctgggtgatctgttcaag
cgccaccgcggcgcgtgcccgatcaccatggagtacaccagtcccgatgcgaaggccttg
ttgcagttcggcgagacctggcggatcgatccggcggatgccttgattcaagccctgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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