Pseudomonas cucumis: PSH97_06680
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Entry
PSH97_06680 CDS
T09632
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pcuc
Pseudomonas cucumis
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcuc03016
]
PSH97_06680 (rnd)
Enzymes [BR:
pcuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSH97_06680 (rnd)
Transfer RNA biogenesis [BR:
pcuc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSH97_06680 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
LprI
Motif
Other DBs
NCBI-ProteinID:
WLG86204
UniProt:
A0ABY9F0J3
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All DBs
Position
1487657..1488790
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVFVQLRPKLSDEKYAWV
LEDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWRETQARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSGSVSPDQWPPAVPEPL
PVDAAALVKQLRAIGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcagttttgcgccgag
tggcagcagctgccattcgttgccctcgacaccgaattcatgcgggtcgacaccttttac
ccgatcgcaggcctgctgcagatcggcgatggcgtacgcgcttacctgattgatccactg
accatcgacaattggcagccattggccgcgttgctggaaaaccctgccgtggtcaaggtc
gtgcatgcgtgcagcgaagacctcgaagtcctgctgcgcctgaccggcagcctgccggcg
ccgctgttcgacacccaactggccgccgcttacctgaacctcggtttctccatgggttat
tcgcggctggtgcaggaagtgctcggcatcgacctgcccaagggcgaaacccgttccgac
tggctgcaacgtccgctgtccgacacccagatcagctacgccgccgaagatgccttgcac
ctggcggaagttttcgtacagctgcgtccgaagctttctgacgaaaaatacgcctgggtt
ttggaagacggtgccgagctggtggccaacctgcgtcgcgaggtcgacccgtatgaggtc
tatcgcgacgccaaactggcctggaaactgtcccgcgcccaactcgccgtgttgcgtgag
ctttgcgcctggcgtgagacgcaggcccgtgcccgtgatctgccgcgcaaccgcatcatc
cgtgagcattccctgtggccattggcgcgcacgcaaccggacaacctcggcgcgctggcg
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgaatttctgcttgatctg
atcaagcgctctggcagtgtgtcgcctgatcaatggccaccggcggtgccggagccgttg
ccggtggacgccgccgcgctggtcaaacagctgcgcgccatcggccaggctgaagccgaa
cgcctgaacatcgcgccagaactgatgctgcgcaagaaaaccctggaagcgctgctcaag
agcggcttccccaatggtccttaccaattgcctgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccttga
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