Pseudomonas cucumis: PSH97_17045
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Entry
PSH97_17045 CDS
T09632
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcuc
Pseudomonas cucumis
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcuc03016
]
PSH97_17045
Enzymes [BR:
pcuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSH97_17045
Transfer RNA biogenesis [BR:
pcuc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSH97_17045
Prokaryotic type
tRNA splicing ligases
PSH97_17045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
Motif
Other DBs
NCBI-ProteinID:
WLG82828
UniProt:
A0ABY9EUE9
LinkDB
All DBs
Position
complement(3782772..3783998)
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AA seq
408 aa
AA seq
DB search
MQQPVYQLLEVANGKPIKLWTEGVPVESEARQQLINIAKMPFIFRHLAVMPDVHLGKGST
IGSVIPTIGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRSAIEKAVPHGRTLSHG
RRDEGAWNHVPQQADQAWAALSSRFKAITDKYPKLASTNNRHHLGTLGTGNHFIEVCLDE
TNRVWFMLHSGSRGVGNAIGTLFIQLAQADMRQHIANLPDRDLAYFKEGSRHFDDYVEAV
GWAQDFARQNRALMMQAVIQAARQVIRKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVMSRTKAKNTFTVADQIRA
TAHVECRKDAAVIDEIPMAYKDIDKVMYAQRDLVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaacctgtctaccaactgctggaagtcgccaacggcaagccgatcaaactctgg
accgagggtgtgccggttgaaagcgaagcccggcagcaattgatcaatatcgcgaaaatg
ccgttcatcttcaggcacctggcggtgatgccggatgtgcatctgggcaaagggtccacc
atcggcagtgtgatcccaaccataggcgcgatcattccggcggccgtgggggtggacatc
ggctgcggcatgattgccgcgcgcacttcactgaccgccgccgacttgccagacaacctg
cacggcctgcgcagcgccatcgaaaaggccgtgccccatggccgcacgttgagccatggc
cggcgcgatgaaggcgcctggaatcacgttccacagcaagccgatcaagcctgggcagcg
ctgagctcacggttcaaggcgatcaccgacaagtacccgaaacttgccagtaccaataac
cgccatcacctgggcaccctcggtaccggtaatcacttcatcgaggtctgcctggacgag
accaaccgcgtctggttcatgctgcacagcggttctcgcggcgttggcaatgccatcggg
accctgttcattcaattggcccaggcggacatgcgtcagcacattgccaatctgccggac
cgcgatctggcctatttcaaggaaggcagccggcatttcgacgactacgtcgaagcggtg
ggctgggctcaggacttcgcccgacagaaccgggcgttgatgatgcaggcggtgattcag
gcagcgcggcaagtgattcgaaaacctttcgaggtcgcgctggaggcagtgaactgtcac
cacaattacgtgcagaaagagcggcacttcggtgaagaggtcctggtcacccgcaagggc
gcggtgtcggcgaagaagggcgagctggggatcattcccggctccatgggggccaaaagc
ttcatcgttcgggggctcggcaacgagcaatcgttctgttcctgcagccacggtgccggt
cgtgtcatgagccgcaccaaagccaaaaataccttcactgtcgcagaccagatccgcgcg
accgctcatgtggagtgccgcaaggatgcggcggtcatcgatgagattccgatggcttac
aaggatatagacaaagtcatgtacgcccagcgtgatctggtggaagtgctgcacaccttg
cgacaggtggtctgtgtgaagggatag
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