Pseudomonas cucumis: PSH97_19830
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Entry
PSH97_19830 CDS
T09632
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH97_19830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcuc03019
]
PSH97_19830
03009 Ribosome biogenesis [BR:
pcuc03009
]
PSH97_19830
Enzymes [BR:
pcuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSH97_19830
Messenger RNA biogenesis [BR:
pcuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSH97_19830
Ribosome biogenesis [BR:
pcuc03009
]
Prokaryotic type
rRNA helicases
PSH97_19830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
WLG83346
LinkDB
All DBs
Position
complement(4393702..4395375)
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagct
gtcattgcgaccggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gccctgccgatcctgcaccgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagttctggctaccgtgaaccacctggttctcgatgaagccgatgaa
atgctcaaactgggtttcatggacgacctcgaagttatcttcaaggctctgcctgcaacc
cgtcagaccgtattgttctcggctaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtggaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ttggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgct
cagaaccagcgtgagcgcgtgatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggtctggacgttccgcgcattactcacgtgttcaacgtc
gacatgccgtacgatcctgagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgccctgctgctggtgactcctcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgccgaagttcgtctgccggacgcccaggccgttctt
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtagctgatgccgaatcg
actcatggtgatctgctggatcgcctgaccgccgacatcggttgcaccccgcgtgcactg
gccgctgctctgctgcgcaaggcaaccaatgctcaggcgctgaccctggccgcaatcgag
aaagaacgtccattggtgccgaacaatgcaccgcgtggcgatcgtccagagcgttccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgctccggttccattggccgaaggtcgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctgaatgaaggcggtttggcgcgtgaagccatcggccgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggagcgtctgctgaccaaactgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctatcgcgaagattga
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