Pseudomonas cucumis: PSH97_20680
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Entry
PSH97_20680 CDS
T09632
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH97_20680 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcuc03019
]
PSH97_20680 (rne)
03009 Ribosome biogenesis [BR:
pcuc03009
]
PSH97_20680 (rne)
Enzymes [BR:
pcuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSH97_20680 (rne)
Messenger RNA biogenesis [BR:
pcuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSH97_20680 (rne)
Ribosome biogenesis [BR:
pcuc03009
]
Prokaryotic type
rRNA processing factors
PSH97_20680 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WLG83507
LinkDB
All DBs
Position
4571184..4574384
Genome browser
AA seq
1066 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEASINQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAAPMPAPAAVAPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNG
RQQSRNRNGRRDEERKPREERAPREERAPREPREAREEAPAVAQERAPREERAPRAPREE
RAPRAPREDRKPRGEREERPVRELREPLDAAPAAAANAEERPARPPREERAPRPPREERQ
PRVEQAAAAVAEEELTTNEEQLQEDGQEVAEGDRPRRRSRGQRRRSNRRERQRDANGNVI
EGSEESESAENAETPSTADLAAGLAVTAAVASSVISAPAEAQANEQAERATAATQETAPV
EAPVVEATTPVEVTAAPEIEVAPVREAQPEVEAAAEPSIAAEPAASAEPVVEAPVAEPVR
EVREEQTTFNWVAEPPVAAEAPAPVAEAPVAEAMVSEPVVAAAEPAPAVVEAPVVAEEAA
PVVEAAPVSALTPSGRAPNDPREVRRRKREAERLQKEAELAATAAPAAAEPAPVVAEVVE
AAPAPAAEVAAEPVESAIDEAPRSVQEAVEQHEQALEKEHEPKPLA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgctgccctgaccactttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
attgaaggtgaagagcgcaacgaactgcgtgaagccctgaacggtctggttgccccggcc
gacatgggtctgatcgttcggactgccggcctcggccgcagcagcgaagaaatgcagtgg
gatctcgattacctgctgcaactgtggaccgccatcaaagaagcttcgctggatcgttcc
gcgccgttcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgattatctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaagatcaagctatacgaagacagcgtt
ccactgttcaaccgtttccagatcgaaagccagatcgaaaccgccttccagcgtgttgtc
gaattgccttccggcggctccatcgttatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgctctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcttgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcaagtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagtggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgcgacgttgaatcgctgtcgctggcaatc
ctgcgtctgattgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcacaagtg
ccaattccggttgcagcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcattctgccgaacgatcacctcgaaacgccgcacttc
gaagttcagcgtctgcgcgatgacagcccggaagccagcatcaaccagtccagctacgaa
atcgctgctgccgctgccgaagtcgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgcggtcaaaacggctccggcccgcgccaacgctccggttccgacc
gaagtcgccgctgctccaatgcctgcaccagccgccgtagcgccagagccaagcctgttc
aaaggcttggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgcgccg
gttgtggttgaaaagcctgccaccgaacgccctgcccgcaacgaagagcgtcgcaacggc
cgtcagcagagccgcaatcgtaacggtcgccgcgatgaagagcgcaagcctcgtgaggaa
cgtgcaccgcgtgaagaacgcgcaccacgtgagccccgtgaagcccgcgaagaagctccg
gcagtcgcccaggaacgcgctccgcgcgaagagcgcgccccacgtgcccctcgtgaagaa
cgagcaccgcgcgccccgcgtgaagatcgcaagccacgtggcgagcgtgaagaacgcccg
gttcgtgaattgcgcgagcctctggatgccgctccggccgccgctgccaacgctgaagag
cgtccagcccgtccgccacgtgaagaacgcgctccacgcccaccgcgtgaagaacgtcag
ccacgcgtagagcaagccgctgccgccgttgccgaagaagagttgaccaccaacgaagag
caactgcaggaagacggtcaggaagtcgccgaaggcgatcgtccacgccgccgctcccgt
ggccagcgtcgtcgcagcaaccgtcgtgagcgtcaacgcgatgccaacggcaatgtgatc
gaaggttcggaagaatccgaatcggctgaaaacgccgaaacgccaagcactgccgatctg
gccgccggcctggctgttaccgcagctgttgccagctccgtgatcagcgcacctgccgaa
gcacaagccaacgagcaagccgaacgcgccactgccgccacgcaggaaaccgctccggtt
gaagcgccagtcgttgaagcgaccacgccggtagaagtcaccgctgctccggaaatcgaa
gtggcaccggttcgtgaagcacagcctgaagttgaagctgccgctgaaccgtccattgct
gccgagcctgctgcttccgctgagcctgtggttgaagcgccagtggctgaaccggtacgt
gaagttcgcgaagagcaaaccacgttcaactgggttgccgagccacccgtagctgccgaa
gctcctgcgccagtcgctgaagccccggttgctgaagccatggtctccgagccagtggtt
gccgccgccgagcctgccccagcggttgttgaagcgccagttgttgccgaagaggctgca
ccggtggttgaagccgctccagtcagcgctctgaccccaagtggccgtgcgccgaacgac
ccgcgtgaagtacgtcgtcgcaagcgtgaagccgagcgtctgcagaaggaagccgaactg
gctgccactgctgctccggccgctgccgagccagcaccggttgttgctgaagtcgtcgag
gcagcccctgccccggcagctgaagtcgctgccgaaccggttgaatccgcgatcgacgaa
gcaccgcgctccgttcaggaagcggtagagcaacacgagcaagccctggaaaaagagcac
gagcctaaacccctcgcctga
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