Pseudomonas cucumis: PSH97_21085
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Entry
PSH97_21085 CDS
T09632
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcuc
Pseudomonas cucumis
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcuc03009
]
PSH97_21085
Enzymes [BR:
pcuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSH97_21085
Ribosome biogenesis [BR:
pcuc03009
]
Prokaryotic type
rRNA helicases
PSH97_21085
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
WLG83582
LinkDB
All DBs
Position
complement(4657279..4658625)
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AA seq
448 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVEECTNRQQTM
LFSATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSVER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKAPTKRKIANR
PKTDALSLVSKDGMAPLKRRKPEAPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccaacgcctgtgcaagcagcggctatcccgctggcgctccaggggcgtgacctg
cgggtgacagcgcaaaccggtagcggcaaaaccgctgcattcgttttgccgatcctcaac
cgcttgatcggcccggccaaagtccgcgtcagcatcaagaccctgatcctgctgccgacc
cgcgagctggcccagcagaccatcaaggaagtcgagcgcttcgctcagttcaccttcatc
aagtctggcctgatcaccggcggtgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctgatcggtacgccgggccggatgatcgagcaactgaacgccggcaac
ctcgacctcaaagaagtcgaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggctttgccgaagacgtacagcgtctggtggaagagtgcaccaaccgtcagcagaccatg
ctgttctccgccaccaccggcggttcgggcctgcgcgagatggtcgccaaggtcctgaac
aacccggaacacttgcagctgaacaacgtcagcgatctgaacgcgaccacccgtcagcag
atcatcaccgctgaccacaaccagcacaaagaacagatcgtgaactggctgctggccaac
gagacctatcagaaggccatcgtgttcaccaacacccgggccatggccgaccgtatctac
ggtcgtctggtggctcaggaatacaaagcgttcgtgctgcacggtgacaaagaccagaaa
gaccgcaaactggccatcgaccgtctgaagcagggcggcgtgaagatcctcgtggccacc
gacgtcgcggcccgtggcctggacgtggaaggcctggacctggtgatcaacttcgacatg
ccgcgcagcggcgacgaatacgttcaccgcatcggtcgcaccggccgcgccggcaacgat
ggcctggccatctcgctgatctgccatggcgactggaacctgatgtcgagcgtcgagcgc
tacctcaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaaaaaggtcaaggcctccggcaaagccgttggcgtgaagaagaaaaaggtcgacgcc
aagggcgacaagaagaaaaccggcgccaaggccccgaccaagcgcaagatcgccaaccgc
ccgaagaccgacgccctgtcgctggtcagcaaggacggcatggccccgctcaagcgccgc
aagccggaagcgccggctgctgaataa
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