Pseudomonas cucumis: PSH97_23060
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Entry
PSH97_23060 CDS
T09632
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH97_23060 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcuc03019
]
PSH97_23060 (rhlB)
Enzymes [BR:
pcuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSH97_23060 (rhlB)
Messenger RNA biogenesis [BR:
pcuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSH97_23060 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WLG83945
UniProt:
A0ABY9ET94
LinkDB
All DBs
Position
5094241..5095728
Genome browser
AA seq
495 aa
AA seq
DB search
MTVLKALKKMFGKSETEQLAPVSSAPSHTPSHRTDGNQPGRTATVAAPKHEPVTTPTAPA
APAIASEQPRSEAPKPAKPRREPKPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHA
IQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMG
EPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATP
GRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQTLLFSATFT
EDVMNLAKQWTTDPSIVEIESQNVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVF
ANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI
DGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEALLGRKISCE
TPPTHLLRAVERKRP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaaaatgttcggtaaaagcgagactgagcagctcgcg
ccagtctccagcgctccttctcatactcccagccaccgcaccgacggtaatcagcctggc
cggaccgcaaccgtagcggcaccgaaacacgagccggtgaccacaccgaccgcccccgca
gccccggccatagcctctgagcagccacgcagcgaagccccgaaaccggcaaaaccgcgt
cgcgaacccaagccaaaagcgccggttattccctggaaactcgaagacttcgtcgtcgaa
ccccaggaaggcaaaacccgcttccacgatttcaaactcgcccccgaactgatgcacgcc
attcaggacctgggcttcccgtattgcacgccgatccaggcgcaggtgcttggcttcacc
ctcgcgggtaaagacgccatcggtcgcgcccagaccggcaccggcaaaaccgccgccttc
ctgatttcgatcatcactcagctgctgcaaaccccgccgcccaaagagcgctacatgggt
gaaccgcgagcactgatcatcgctccgacccgggaactggtggtgcagatcgccaaggat
gcagccgacctgaccaagtacaccggcctcaacgtcatgacatttgtcggtggcatggac
ttcgacaagcaactcaagcacctcgaagcccgtcattgcgacatcctggtggccactcca
ggccgcttgctcgacttcaaccagcgcggcgatgtgcacctggacatggtcgaagtgatg
gtgctggacgaagccgaccggatgctcgacatgggtttcatcccgcaagtgcgtcagatc
attcgccagactccaccgaagaacgagcgtcagacgctgctgttctccgcaaccttcacc
gaagacgtgatgaacctcgccaagcaatggaccaccgacccgtcgatcgtcgagatcgag
tcgcagaacgtggccagcgaaaacgtcgagcaacacatctacgccgtcgccggtgccgac
aaatacaaactgctctacaacctggtcaacgataacggctgggaacgggtgatggtcttc
gccaaccgcaaggacgaagtgcggcgcatcgaagaacgcctggtgcgcgatggcgtcaac
gccgcgcaactgtctggcgatgtgccgcagcacaagcgcatcaagaccctggaaggtttc
cgcgaaggcaagatccgcgtgctggtggccaccgatgttgccggtcgcggcattcacatc
gatggcatcagccacgtgatcaacttcaccctgccggaagtcccggacgactacgtacac
cgcatcggtcgtaccggccgtgccggcgcggatggcgtatccatcagttttgccggtgaa
gacgactcctaccagctaccgtccatcgaggcgctgctgggtcgcaagatcagttgtgaa
acgccaccgacgcatctgctgcgagcggttgagcgcaagcgcccgtaa
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