Pseudomonas cucumis: PSH97_25155
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Entry
PSH97_25155 CDS
T09632
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSH97_25155 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcuc03021
]
PSH97_25155 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcuc03400
]
PSH97_25155 (rpoC)
Enzymes [BR:
pcuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSH97_25155 (rpoC)
Transcription machinery [BR:
pcuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSH97_25155 (rpoC)
DNA repair and recombination proteins [BR:
pcuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSH97_25155 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
WLG84335
LinkDB
All DBs
Position
complement(5529273..5533472)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAGDEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggcaaaagttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccagttgcccatatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttattgatccaggcatgaccacccttgaaaaaggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgatttcgatgcccgcatg
ggtgccgaagctgtccgtgaactgctgcacgctatcgacctggagcacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactctgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgtctgctcgatctgtccgctccggacattatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgacgcactgctcgacaacggtcgtcgtggtcgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgttggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtcttgctaccaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgctgaagtgattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgatcgtgat
ggtggcagcgtcaagaacacccgtatcgttgacactactgttggtcgtgcgctgttgttc
caggttgttccacctggcctgtcgtacgacgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttattcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgcagccaccgacgaa
gtgaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtaatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgtcgaagtcgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgctcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcattgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaaggtttggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtgaccgagatcgattgcggcaccgaacatggcctg
gtgatgactccgcacattgaaggcggtgacgttgttgagccgttgggtgagcgcgtattg
ggtcgtgtcattgcccgtgacgtattcaagccaggtaccgaagaaatcatcgttcctgcc
ggcacgctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggc
cgtgacctggctcgtggtcaccaggtgaacatcggtgaggcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaagcacgttgagcgagtggatggctgcctggttgctgtgtcccgttccggt
gagctggcgatcgctgatgacttcggtcgtgagcgcgagcgttacaagctgccgtatggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagaccgtccagctgccggcaaagatatccgtcctgctgtgaagatg
gttgatgacaacggtaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagccaacgccctggtcggtgttgcggatggtgcgaaaatcgcgatcggtgatgtt
atcgctcgtattccgcaagagacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggttatcaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgttctggtagagaacgagcgtctggctggcgacgagaaattcgtttcc
aagttcactcgcgtgctgttgggtatcacgaaggcgtcgttgtccaccgaatcgttcatt
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtttgatcccggcgggt
accggtctggcttatcacagtgagcgtaagcgccgtcgtgatgctgacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcaagcggtaactga
DBGET
integrated database retrieval system
