Phaenicophaeus curvirostris (chestnut-breasted malkoha): 138731185
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Entry
138731185 CDS
T11607
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pcur
Phaenicophaeus curvirostris (chestnut-breasted malkoha)
Pathway
pcur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138731185 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcur03041
]
138731185 (DDX42)
Enzymes [BR:
pcur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138731185 (DDX42)
Spliceosome [BR:
pcur03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138731185 (DDX42)
Complex B
138731185 (DDX42)
Complex C
U2 SnRNP specific factors
138731185 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
138731185
NCBI-ProteinID:
XP_069733056
LinkDB
All DBs
Position
26:complement(411173..429147)
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AA seq
955 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSATFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANSDSPVAATAAVKGVPGFTSSGNLNSVPT
FPSVGIQSFNNANASSSSREGISGTGVAAGGSGGSGSGSSGGGRGGGSSGGVGSIVRERY
NDNRNSRHNELPRRGEGGGRYNDVQRHGEGVGRHSDAYRHGEGRHSDNHRHGESRHFADV
GSGIHNNSDSRNSSEGRNNENRNGENRKDANNRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaaaagaggctttggttttggtggatttgcc
ataacacctggaaagaaagaggagcctaagctctctcagcagtctcatagtgcttttgga
acagccggttcttcagctacatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcctactttgaggatgaagaa
gaagattccagcaatgttgaattgccgtacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagaggcttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcatat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggaatatgatagcgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccaccaattgaccattcagagattgaatatccaccatttgagaaaaatttctacgacgag
catgaggagatcactagtctcaccccacagcaggtggtagagttacgacataagctaaac
ctccgggtctctggtgctgctcctccgaggcctggcagtagtttcgctcattttgggttt
gatgagcagcttatgcatcaaattaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccagttgcactaagtggcagagatatgattggcatagctaagactgga
agcggaaaaacagcagccttcatctggccaatgttgattcacatcatggatcagaaggaa
cttgagccgggggatggtcccattgcagtgatcgtatgcccaaccagagagctttgccaa
cagatacattctgaatgtaagcgctttggtaaggcatataatctgcgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatcgtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacctaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagtcatgtacgacctgacagacagactctgttgttcagtgccact
tttcgtaagaagattgagaaattggctcgagatattctgatcgaccctattcgagttgtg
cagggagacattggagaggcaaatgaagacgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagc
gttctcctgtttgttaccaagaaggcaaatgcagaagagctggccaataaccttaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaagggcatcccgatattggtagctactgatgtcgcagctcgt
ggattagatattccttccattaagactgtcatcaattacgatgtggctcgggacatagat
acgcacacgcacagaattggtcgtactggcagagcaggcgagaaaggagttgcctacact
ctgctgactcccaaagacagtaactttgctggtgatcttgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatttagcaatgcagaatccatggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggtttagggtat
cgtgaacgtcctggtctggggtcagaaaattctgaccgtggaaacaacaacaatgtgatg
agcaactatgaggcgtacaagccttccactggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtcccaatataagagccactttgttgctgcgagcttaaataatcaa
aagactggtagctctgctgctggtgctagtggctggaccagcgctgggagcttgaactca
gtaccgacaagttcagcacagcaaaatgctgcaaattctgacagtccagttgcagccacc
gcagcagtaaagggtgttccaggtttcaccagctcggggaatttgaatagcgttcccacc
tttcccagtgtcggaatacagagcttcaacaatgcaaatgccagctccagcagccgagaa
ggcatcagtggcaccggtgttgctgctggtggcagcggtggcagcggcagcggtagcagc
ggcggtggccgtggtggtggcagcagtggtggtgttggcagcattgtcagagaacgatac
aacgataaccggaacagtcgccacaatgagctcccgcgccgtggagagggtggtggtcgc
tacaatgatgtgcaacgtcacggagaaggagttgggcgccacagtgatgcttaccgccac
ggagagggccgacacagtgacaaccatcgccacggtgaaagccggcacttcgctgatgtg
ggcagtggcattcacaataatagtgacagcaggaatagcagtgaaggtaggaacaacgag
aacaggaatggtgagaacaggaaggatgccaacaaccgagacaacaagacagatggcttt
gctgtcccagagcccccaaaacgtaagaagagccggtgggacagttaa
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