Phaenicophaeus curvirostris (chestnut-breasted malkoha): 138732834
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Entry
138732834 CDS
T11607
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcur Phaenicophaeus curvirostris (chestnut-breasted malkoha)
Pathway
pcur03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcur00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138732834 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcur03021
]
138732834 (PCF11)
03019 Messenger RNA biogenesis [BR:
pcur03019
]
138732834 (PCF11)
Transcription machinery [BR:
pcur03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138732834 (PCF11)
Messenger RNA biogenesis [BR:
pcur03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138732834 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
INCENP_ARK-bind
Motif
Other DBs
NCBI-GeneID:
138732834
NCBI-ProteinID:
XP_069735624
LinkDB
All DBs
Position
1:163214199..163235424
Genome browser
AA seq
1709 aa
AA seq
DB search
MSAPESSAGGGGEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEA
QIAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAV
TSGASTPPAVPEVQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGSSTIASVPAPSKQHVSPTPHVTVKPPHQSPVQSERSKPSPSPPLHDLKVVNRDPRLNR
TGQQSSHAKDQSHRKEFPPNMTNQSDTKANKTTPTEKQNSTKPEKLKASEKTQKKELDQS
EVKSKSPSPLKNKQPNTKDTKPQEGESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRR
NIEKKEKEEHKTSEHRPAGSRNKVINGAVQKQEVTTEESEKQSGKQGRSRKRSRSRSPKA
RSPSTHSPKRRERRSPKRRLRSISPTSSAPKIGKIRPVGPKQSHTEEGTQAARDERSSNK
RNTKQEVRDPRRVKKVQEDRPLETASLHSTKASPDPKENAENWQGSKSGKRWKSGWEDNK
NSQQNEEHQAPGKSPHQRHRENWPAVKGILSPRAPKQQHRLSVDANLQIPKELTSASKRE
LLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDGPTEEKCGLKKKPLLSD
AELTYYEHKAKLKRTQVQHTLSRLDLLDPDDILDYQLPDALLSGLDCEQAKAKRGAQFDR
KEAFGERPRRHSPVSGTNRPFTENLSPLESRRRLEEPGATKGARGSKNFDPYDSWGESEE
LRDALRQQGKSTTEFQKIDGEAVCRFDNREERPLLGQAGVREEPRSPFSERFKRTRYEDP
EKAAFSESPGSRFAGIEAKKQRISALMEDRPLFDGSSRPAAARVGVDGPGSPFVDGPAAG
SNSRIEGPPGQAAMRFDGPLVAAGASQFDGPLAGTGGAAALRFDGPPGQLAGSLRFEGPP
GQVGGGGPMRFEGPLGQIGGPLRFEGPAGQPLGGPRFDGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFDGPHGPSGGGLRLDGPHGQPGVGPRLLDGPVHQGAGGLRFD
GPLGRAGPRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVASHPASRLEMTPYGQGGPFVDHPGQGYNGPSHGM
QFQRPDLFDGSPGPNFNGPAGPGAQNFPLRGVGHYFDEKGLQGPQYGNFNNLPMGSNQVS
LMSAQPGPYGQGQQYLPNPGGFVQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLS
KTDSTSAQANEASAQPAAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDLPKVK
EEPEDTPAACAEESTPASTEVKTEPEESV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgccggtggcggcggcgaggcccgcgaggacgcgtgccgc
gattaccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctg
accatcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcg
caaatcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccatt
gtcaagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacattt
atttgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgatatttttcctttgaagaagctatatgcacttgatgtcagagtcaactca
ttagatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccat
gtgaatcctaagtttttaaataaatcgccagaggaatctgctgcacctacctctgctgtc
acttctggtgcctctactcctcctgctgttcctgaagtacaaaagaatttgacacaggag
caactgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaa
aagttagagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcag
caaggatcatctactatagcttccgttccagcaccgtccaagcaacatgtgtctcctaca
cctcatgtgacagttaaaccacctcatcagtctcctgtgcaatctgaaagaagcaaacca
tccccaagtcctccacttcatgatctcaaagtagtaaatagagatcctcgacttaataga
acaggtcaacaatcttctcatgctaaggatcagtctcacaggaaagaattcccaccaaac
atgaccaatcagtcagatactaaggcaaacaaaaccacaccgactgaaaaacaaaactca
acaaagccagaaaaattgaaagcaagtgaaaaaacacagaagaaagaacttgaccagtca
gaggtgaaatctaaatcaccatcccctttaaaaaataagcaacccaatactaaagatact
aaaccccaggaaggtgaaagcacaaaagtatctgaaattagtaagagggatccaagactg
aaaagacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggaga
aatatagagaagaaagaaaaagaagagcataagacctctgaacatagaccagcaggcagc
agaaataaagtaattaatggtgctgttcagaaacaagaggtgactacagaggagtcagaa
aaacagagtgggaaacaagggagatcaagaaaacggtcacgatcgcgctctcctaaggca
cggtcaccgtctacacattctccaaagagacgagagaggagatcacctaaaagacgactc
agaagcatatctcccacctcatcagctcctaaaattggaaagatacgtccagtaggccct
aaacagtctcatactgaagaaggcacacaggcggcaagagatgaaagaagttctaataag
agaaatactaaacaagaggtgcgagatccaaggagagtgaaaaaagtccaagaagacagg
cccctagaaacagcaagcctgcattccacaaaagcttctcctgatccaaaggagaatgct
gaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagataataaa
aactcacagcagaatgaagaacaccaagcacctggtaaatcccctcaccaaagacaccgg
gaaaactggcctgctgttaaaggaattttatcaccccgagcaccaaagcagcagcaccga
ttaagcgtggatgctaatttacagattcccaaagaactgacatctgcaagcaagagagaa
ttacttaaaaaggccaatgaacggttaacatctggtgaaataacacaagatgagttcctt
gtggtggctcatcagatccgacagctgttccagtatcaggaaggaaaacacaggtgcaat
gtctgggatggtcctacagaggaaaaatgtggtttgaaaaagaaaccgctgctatcagat
gcagaattaacatattatgaacataaagctaagctaaaaagaacacaagttcagcataca
ttgtcaaggcttgatctgttggatcctgatgatattttggattatcagttgcctgatgct
ttgctttctggattagactgtgagcaagcaaaagccaagcgtggagcacagtttgacaga
aaagaagcatttggagaaagaccaaggagacactctcctgtaagcggcactaacagacct
ttcactgagaacctctcgccgcttgagagtagacgaaggcttgaggaacctggtgctact
aaaggagcaagaggttctaagaactttgatccttatgacagctggggagaatcagaagaa
ttaagagatgctctgagacaacaggggaaaagcacaacagagttccagaaaatagatggt
gaagcagtttgcagatttgataatcgtgaagaaagaccacttcttgggcaagctggtgtt
cgagaggaaccaagatcaccattcagtgaacgtttcaaaagaactagatatgaagatcca
gagaaagcagcattttccgaaagtccgggatcaagatttgcaggcattgaagcaaaaaag
cagaggataagtgcgctaatggaagacagacctctgtttgatggctcatctagaccggct
gctgcccgggttggggtagatggaccaggaagtccttttgttgatggtcctgctgccggt
tcaaattccagaattgaagggccacctggacaggctgctatgagatttgacgggcctttg
gtggctgcaggtgcctctcagtttgatggaccactggcaggaacagggggagctgcagcc
ctaaggtttgatgggccaccagggcagctagcagggtccctgaggtttgaaggacctccg
ggacaggttggtggaggtggtccaatgaggtttgagggacctcttgggcagataggtggg
cccctgaggttcgaggggcctgctgggcagcctctgggtggtcctaggtttgatggacct
ggagttgggctcaggtttgagggtcctcgtggtcagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcagccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccaggaggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggtctcaggtttgag
gggccgcatggtcagcctatggggccacatggaccgtcaggtggtgggcttagatttgat
gggccacacggaccttcaggtggtgggctcagattggatggacctcatggtcagccaggt
gtaggtcctcggttgcttgatggaccggtacaccagggagctggtggacttagatttgat
ggccctctgggtcgtgctggtccaagatttgatggttgtcatggagctggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcgcctgggcaacaggcacaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccgcttggccttcaaggt
gcacgttttgaaaatgtagctagccatcctgcctcaagactagaaatgacaccgtatgga
caaggcggtccatttgtcgaccatcctggccagggctacaatggaccatctcatgggatg
cagttccagaggcctgatctgtttgatggttcacctggaccaaatttcaatgggccagct
ggcccaggagcacagaatttcccactgagaggagttggacattactttgatgaaaagggt
cttcagggtcctcagtatggaaacttcaataatctgccaatgggaagtaatcaggtttct
ctcatgtctgctcaaccagggccttatggtcaaggtcaacagtatttgccaaatcctgga
ggttttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttggg
caggttgatgtcaatgagttgtttgctaagctgctgaaaacaggaatccttaaactgtca
aaaactgattctacgtcagcacaagcgaacgaagcatcagcccagccagctgctgaagag
gaggatgatgaccagaatgaagatcagaatgtcccagatctcactaacttcattgttgaa
gaactcaggcagcgttacgatagtgtaataaatcgactgtacactgggattcagtgttac
tcgtgtggcatgagatttactacttcacagacagatgtttatgcggatcatttagattgg
cactatcgtcagaaccggacagaaaaagacgttagcagaaaaattacacaccgaagatgg
tactacagtttaacagactggattgaatttgaagaaatagccgatctagaggaacgtgca
aaaagccagttctttgaaaaagctcatgaagaggtggtgttgaaaacacaagaagctgca
aaagagaaggagtttcagagtgtccctgctggaccagctggagcggtcgagagctgtgaa
atttgccaagagcaatttgaacagtactgggatgaggaagaggaagagtggcacctgaag
aacgctatcagagtagatgaaaagatttaccatccttcttgctatgaagattaccaaaat
acatcatcatttgattgcacaccatctcccagcaagactcctgtcgaaaacccactaaat
ataatgttgaacattgttaagcaagaaactcaggagtcctgtgacttgcctaaagtcaaa
gaagaacctgaagacacccctgctgcctgtgcagaagagagcacacctgcatctacagag
gttaaaacagaacctgaagagtctgtataa
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integrated database retrieval system
