Phaenicophaeus curvirostris (chestnut-breasted malkoha): 138732867
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Entry
138732867 CDS
T11607
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
pcur Phaenicophaeus curvirostris (chestnut-breasted malkoha)
Pathway
pcur04510
Focal adhesion
pcur04512
ECM-receptor interaction
pcur04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pcur00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138732867 (COL2A1)
04518 Integrin signaling
138732867 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138732867 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcur00536
]
138732867 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pcur00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138732867 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138732867
NCBI-ProteinID:
XP_069735707
LinkDB
All DBs
Position
38:554057..572893
Genome browser
AA seq
1488 aa
AA seq
DB search
MAAPPPPRARAAALIALVLVLGAAAQDRDLPAAGSCLQDGQTYSDKDVWKPEPCRICVCD
TGTVLCDDIICEDHHDCPSPEIPFGECCPICPTDQPSGWQPGPKGQKGEPGDIKDVVGPR
GPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLTGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPM
GPRGPPGPPGKPGDDGETGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQ
GAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLA
GPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGATGPVGPTGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPP
GADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPPGPPGSAGKEGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEP
GEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPP
GPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPV
GPTGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPA
GPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRADEAAGGLRQHDVEVDATL
KALNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMET
GETCVYPTPRSIPRKNWWTSKTKDKKHVWFGETINGGFHFSYGDEDLAPNTANIQMTFLR
LLSTEGSQNVTYHCKNSIAYMDEETGNLKKAVLIQGSNDVEIRAEGNSRFTYSVLEDGCT
KHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccccccccgccccgggcccgcgccgctgccctcatcgccctcgtcctcgtc
ctcggagccgccgcgcaggacagggacctccccgccgcgggcagctgcctgcaggacggg
cagacctatagcgataaggacgtctggaagccggagccgtgccgtatctgcgtgtgcgac
acgggaaccgtcctctgcgacgacatcatctgcgaggaccaccacgattgtcccagcccc
gaaatccccttcggagaatgctgccccatttgccccactgaccaacccagcggttggcag
cctggtcccaagggccagaagggcgaacccggtgacatcaaagatgttgtaggaccccga
gggcctccgggaccacagggcccggcaggtgagcaaggacaacgaggggaccgtggtgag
aaaggggagaagggtgctcctggcccccggggcagggatggagaacccggcacccctggc
aatcctggcccccctggcccccccgggcctcctggcccccctggtctcactgggaacttc
gcggcgcagatggctggaggcttcgatgagaaggctggaggcgcgcagatgggcgtcatg
cagggccccatgggccccatgggaccccgtggcccccccggaccttcaggtgctcctggt
ccccaaggcttccaaggcaaccccggtgaacccggcgagcccggtgctgctggtccgatg
ggtcctcggggaccgccaggacctcctgggaaacccggtgacgatggcgagacgggaaaa
cctggcaaagctggagaacgtggcccccccggcccccagggtgctcgtggcttccccgga
acacccggcctccccggagtgaaaggacacaggggctatcccggcttggacggcgccaag
ggagaggcaggagctcctggagccaagggcgaatccggctcccccggcgagaacggctcc
cccggccccatgggtccccgcgggctgcctggcgagcgaggacgtcctggcccctctggt
gctgcgggcgctcgtggcaatgatgggctccccggccccgctggaccccctggacccgtt
ggcccagccggagcccccggcttccccggcgcccccggctctaagggtgaagctggtccc
accggcgctcgaggtcccgagggggcccagggaccccgcggcgaatccggcacccccggc
tctcctggccctgccggcgccccgggtaacccaggaactgatggcattcccggcgcaaag
ggctcggcgggcgcccctggcatcgccggtgctccaggcttccccggcccccgcggcccc
cctggacctcaaggtgccaccggcccgctgggacccaagggacagacgggagaacccggc
atcgcaggcttcaagggcgagcagggacccaagggcgagacgggacccgcaggaccccaa
ggtgcccccgggccggctggtgaggaaggcaagagaggagctcgcggtgaacccggtgct
gccggtcctgtggggccacctggagagaggggagctcccggcaatcgcggcttccccggg
caggacggactggccggacccaagggtgctccgggcgagcgcggccccgctggcctggcg
ggtcccaaaggagccacgggggatcctggacgtcccggagaacctgggctgcccggagcc
aggggtctcaccggccgcccgggtgacgctggtcctcaaggcaaagtcggcccaactggc
gctcccggcgaggacggtcgccccggtcccccaggcccgcagggtgctcgtggccagccc
ggcgtgatgggtttcccgggtcccaaaggcgccaacggcgagcctggaaaagccggtgag
aaaggactccctggtgccccaggcctgcggggtcttcctggcaaggatggtgagacggga
gctgccggccccccaggacccgccggtcctgcgggtgagagaggagagcaaggagccccc
ggtccctccggtttccaggggctgcccgggccaccaggtccccccggcgagagcggcaaa
cccggagatcagggtgttcccggagaagctggtgcccctggtctcgtcggtcccagaggt
gaacgcggcttccccggcgagcgcggctctcccggcgcacaaggactgcaggggccccgc
gggctccccggcaccccgggcaccgacggccccaagggtgcaaccggcccggtcggcccc
accggtgcccaaggtcccccagggctgcagggaatgcccggtgagagaggagctgccggc
attgctgggcccaagggagaccggggagacgtcggagagaaaggccctgagggagctcca
ggaaaggacggcgcacgcggtctgacaggtcctatcggtccccctggccccgctggcccc
aacggcgagaagggtgaatctggccctcctggtccatccggtgctgccggcgcccgtggt
gcccctggtgaacgcggtgagcccggtgcccccggtcccgccggatttgccggcccccct
ggcgccgacgggcaacccggtgccaaaggcgagcaaggagagcccgggcagaaaggtgac
gccggcgctccaggtccccaaggtccctctggagctcccggcccgcagggtccaactggt
gtaactggtcccaaaggagctcggggcgcgcagggtcctcctggagccaccggattccct
ggcgctgccggacgtgtgggaccacccggccctaacggtaacccaggcccccctggtcct
cctggctctgctggcaaagagggtcccaaaggtgctcgtggcgatgccggccccccgggc
cgggctggtgaccctggtctccaaggccctgctggacctcctggcgagaaaggcgaaccc
ggagaagatggccccgcgggtcctgatggtccccctggtccccaaggcttggcaggacag
cgtggcatcgttggtctccccggccagcgtggtgaacgaggcttccctgggctgccagga
ccgtcgggcgaacctgggaaacaaggagctcctggctctgcaggcgaccgaggtcccccc
ggccccgtgggtcccccaggtctgacgggtcctgctggtgaacccggacgtgaggggaac
cccggtgcagacggcccccccggcagagacggcgccgccggcgtgaagggcgatcgcggt
gagacgggtcccgttggtgcccccggagcccccggtgcccccggcgctcccggtcctgtc
ggtcccactggtaaacaaggagacagaggcgaggcgggtgcacaaggtcccatgggtccc
gccgggcctgctggtgctcgagggatgccgggtccccaagggcctcgcggtgacaagggt
gagacaggagaagctggagagagagggctgaagggccaccgcggcttcaccgggctgcag
ggtcttcccggaccacccggtccttctggagaccaaggtgctgctggtcctgcgggtccc
tccggtcccaggggtccccccggccccgttggcccctctggcaaggatggctctaacgga
atgcccggccccatcgggcctcccggccctcgaggacgaagcggcgaaccgggccctgcg
ggtcctcctggaaacccaggtccccccggccctcccggccctcccggcaccggcatcgac
atgtcagcgttcgcggggctggggcagccggagaagggacccgaccccatccgctacatg
cgggcggatgaggcggccgggggcctgcggcagcacgacgtcgaggtcgacgccaccctc
aaggccctcaacaaccagatcgagagcatccgcagccctgagggctccaagaagaacccg
gccaggacttgccgtgacatcaagctttgccaccctgagtggaagagcggagactactgg
atcgacccgaaccaaggctgcaccttggatgccatcaaagttttctgcaacatggagacg
ggcgagacctgcgtctaccccaccccccgcagcatccccaggaagaactggtggaccagc
aagaccaaagacaagaagcacgtctggtttggagagaccatcaacggtggcttccacttt
agctacggcgatgaagacctggctcccaacactgccaacatccagatgaccttcctccgc
ctcctgtccaccgagggctctcagaacgtcacctaccactgcaagaacagcatcgcctac
atggacgaggagacgggcaacctgaagaaagccgtcctcatccagggatccaacgacgtg
gagatcagagccgagggcaacagcaggttcacctacagcgtcttggaggatggttgcacg
aaacacactggcaaatggggcaagacagtcatcgagtaccgatcgcagaagacctcgcgc
ctgcccattgtagatattgcacctatggacattggtggagccgagcaggagtttggcgtg
gatattggcccagtctgcttcttgtaa
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