Phaenicophaeus curvirostris (chestnut-breasted malkoha): 138732962
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Entry
138732962 CDS
T11607
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcur Phaenicophaeus curvirostris (chestnut-breasted malkoha)
Pathway
pcur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138732962 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcur03019
]
138732962 (MTREX)
03041 Spliceosome [BR:
pcur03041
]
138732962 (MTREX)
03009 Ribosome biogenesis [BR:
pcur03009
]
138732962 (MTREX)
03016 Transfer RNA biogenesis [BR:
pcur03016
]
138732962 (MTREX)
Enzymes [BR:
pcur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138732962 (MTREX)
Messenger RNA biogenesis [BR:
pcur03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138732962 (MTREX)
Spliceosome [BR:
pcur03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138732962 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
138732962 (MTREX)
Ribosome biogenesis [BR:
pcur03009
]
Eukaryotic type
Pre-60S particles
Helicases
138732962 (MTREX)
Transfer RNA biogenesis [BR:
pcur03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138732962 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
138732962
NCBI-ProteinID:
XP_069735881
LinkDB
All DBs
Position
Z:complement(57536737..57578289)
Genome browser
AA seq
1032 aa
AA seq
DB search
MADAFGDELFSVFEEDSAASAAKKSKAGAGEGARRPGKRSEEKSSVAATGKPKREIEVDN
TKDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEEFTGLKPRTG
KAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG
PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDC
LSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETVEILFSEGLIKALFATETFAMGIN
MPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ
LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEG
QYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPEYCLPFLQPGRLVKVKNEGDDFG
WGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVP
VLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGL
KKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAIDIKAAKRELKKARTVLQMDE
LKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLS
CFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVV
YTWTNGANFAHICKMTDVFEGSIIRCMRRLEELLRQMYHAAKAIGNTELENKFAEGITKI
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgccttcggggacgagctgttcagcgtgttcgaggaggactcggccgcctcc
gcagccaagaagagcaaagcgggcgccggcgagggcgccaggaggccggggaaacgatca
gaggaaaaatcttccgtagctgcgacagggaagcccaaaagggaaattgaggttgataac
accaaagatgccgttttgggaaagaagccaaaactggaagatgttgtatcagaagatgct
aatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaaggttgt
acccatgaggttgcacttccagcagatgaagagttcacaggtctgaagccaagaactgga
aaagcagcaaaagaatatccatttattcttgatgcctttcagagagaagctattctttgt
gtggataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaactgtttgt
gcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttacgagccca
attaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggatgttggc
ttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgacaactgag
attttaagaagtatgctctacagaggttctgaggttatgcgggaagtcgcatgggttatt
tttgatgaaatccactacatgagagattcagagcgtggtgtggtttgggaagagacaatt
attttactccctgacaacgttcattatgtcttcctttctgcaacaattccaaatgcccgt
caatttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttacactgac
tacagacccactccactgcagcattatatattcccagcaggaggagatggactccatctg
gttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaagtgctt
agagatgcaggagacttagcaaaaggggaccagaagggcaggaaaggaggaacaaaaggt
ccttcaaatgtttttaagattgtaaagatgatcatggaaaggaatttccaacctgtgatt
attttcagcttcagtaaaaaagactgtgaagcctatgcacttcagatgacaaagttagat
ttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgattgt
ctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctgaagcga
ggaattggtatccatcatggcggtctgcttcctatcttaaaagaaaccgtagaaattctg
ttctctgagggcctaataaaggccttatttgcaacggagacttttgctatgggaattaat
atgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaaagatttccga
tggatatcttcaggtgaatacattcaaatgtcaggtcgtgcagggcgtcgaggtatggat
gacagagggatagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcag
cttttgaagggttcagctgatccgttaaacagtgcattccacctgacatacaacatggta
ctgaacttgcttcgagtagaggaaataaaccctgaatacatgttagaaaaatccttctat
cagttccaacattacagaacaattcctgaaatagtagaaagggtgaataatctggaagga
cagtacaacaaaatagcaattccaaatgaagaaaatgtggtcatatactataaaatccga
cagcagcttgcaaaactgggtaaagagattgaagaatacattcacaaaccagagtattgc
ttgcctttcctacagccaggaagactggtaaaggtgaaaaatgaaggtgatgacttcgga
tggggagtggttgttaacttctcgaagaaatctaatgtcaagccaaattctggtgaattg
gacccattatacgtagttgaagtgctactgcactgcagcaaagagagtttgaaaaattct
gctactgaggctgcaaagcctgccagacctgatgaaaaaggagagatgcaggttgttcct
gttttggtgcatcttctctcagctatcagcagtgtccgactttacataccaaaagacctg
agacctattgacaacaggcaaagtgtgttaaaatccatacaagaagtacaaaagcggttt
cccgatggagtgccgttactggaccccattgatgatatgggcatcaaagatcaaggactg
aaaaaagtaatccagaaagtagaggcatttgagcacaggatgtattcacatcctcttcac
aatgatcccaacttggaaaccgtttacaaactttgtgaaaaaaaagcacagattgctata
gatattaaagcagcaaagcgagaactgaaaaaagctagaactgtcttacaaatggatgaa
ctcaaatgccgcaagcgtgttttgagaagacttgggtttgccacatcctcagatgttatt
gagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctgacagaa
atgatgttcaatggtctcttcaatgacttaactgcagaacaggcaactgcactactgagc
tgttttgtatttcaagagaattccagtgaaatgccaaaactgacagagcagttggctgga
ccacttcggcagatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaagcaaaa
ctggaaattgatgaagaaaattacttaaattccttcagacccaacctaatggatgttgtg
tatacatggacaaatggagctaactttgctcacatctgcaaaatgactgatgtctttgaa
ggtagcataattcgttgcatgagaaggctagaagagttacttcggcagatgtaccacgct
gcaaaagctattggaaatacagagttggaaaataagtttgcagaggggattacaaaaatc
aagagagatattgtgttcgctgcaagcctttacctgtaa
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