Pectobacterium odoriferum: BCS7_02190
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Entry
BCS7_02190 CDS
T03424
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcv
Pectobacterium odoriferum
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcv03016
]
BCS7_02190
Enzymes [BR:
pcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BCS7_02190
Transfer RNA biogenesis [BR:
pcv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BCS7_02190
Prokaryotic type
tRNA splicing ligases
BCS7_02190
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AIU90409
UniProt:
A0ABD6VVY3
LinkDB
All DBs
Position
479771..480997
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AA seq
408 aa
AA seq
DB search
MKTQAYDMMSPVNSAPVKMWTQGVPVEPEARNQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLMGLRSAIERAVPHGRSVSRS
KRDVGSWQNPPQTVDAHWALLEPRFKRLTDKYPRLLNTNNYQHLGTLGTGNHFIEICLDE
VDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQQHIANLPDRNLAYFEEGSLHFDDYMEAV
EWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaggcttacgacatgatgtcaccagtgaatagcgcgccagtaaaaatgtgg
acacagggggtacccgtggagccggaagcccgtaaccaactgctgaatacggccaaaatg
ccattcatttttaaacatctggcggtaatgccggatgtgcatctgggaaaagggtcgacg
attggtagcgtgatccccacgcgtggcgcaattattcccgctgcggtaggggtggatatc
ggctgtgggatgatcgcggtgcgtacgtcactggtggccagcgacctgccggataacctg
atggggttgcgtagcgcgattgagcgggcagtgccgcacggacgtagcgtgtcgcgctcc
aaacgcgatgtcggttcctggcagaatccgccgcagacggtggatgcgcattgggcgctg
ctggaaccgcgctttaaacgtttgacggataagtatccacggctgctgaacactaacaac
tatcagcatctgggaaccttggggacgggtaaccactttatcgaaatctgtctggatgag
gtggatcgtgtatgggtgatgttacacagcgggtcgcgtggtgtagggaacgcgattgga
tcgctgttcatcaagctggcgcaggaagatatgcagcagcacattgcgaatctgccggac
cgtaatctggcgtacttcgaggaaggaagcctgcattttgacgattacatggaagcagtt
gagtgggcgcaggattttgcccgtcataaccgtgaagtgatgatgtcgcatacgctggcg
gcgctgtctcgtattgtgacgaagccgtttactacccaacaggaaggcgtgaactgccac
cataactacgtgcagcgcgaaacgcactttggtgagtcggtgctgattactcgtaaaggc
gcggtgtcggcgcagaaaggccagatggggatcattccggggtcgatgggagcgaagagt
ttcatcgtgcgcggattagggaacgaagagagcttctgttcctgtagccacggcgcgggg
agaaccatgagccgtaccgccgcgaaaaaacgcttcaccgtggaagatcagatccgtgcg
actgcgcacgttgaatgcagaaaagacagcgacgttatcgatgaaatcccgatggcgtac
aaagatatcgataaggtgatggcggcacagtcatcgctggtggaaatagtacatacgctg
cgtcaggtggtgtgtgtgaaaggataa
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