Pectobacterium odoriferum: BCS7_03025
Help
Entry
BCS7_03025 CDS
T03424
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcv
Pectobacterium odoriferum
Pathway
pcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCS7_03025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcv03019
]
BCS7_03025
03016 Transfer RNA biogenesis [BR:
pcv03016
]
BCS7_03025
Enzymes [BR:
pcv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BCS7_03025
Messenger RNA biogenesis [BR:
pcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BCS7_03025
Transfer RNA biogenesis [BR:
pcv03016
]
Prokaryotic type
tRNA degradation factors
BCS7_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
S1_2
OB_RRP5_4th
aRib
KH-I_KHDC4-BBP
DUF4172
KH_SLS1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AIU87279
UniProt:
A0ABD6VWB3
LinkDB
All DBs
Position
679936..682056
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA
GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINSLVAEAGKPKWEWHAPEVNV
SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNV
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQTQEAAAPSSEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaagttccaatatggtcagcataccgtcacgttagagacc
ggtatgatggcacgccaggctaccgccgctgtgatggtaagcatggatgacactgcggta
ttcgttaccgttgtcggcgctaaaagtgctaaacctggccaaagtttcttcccattaacg
gttaactatcaggagcgtacttacgctgctggacgtttccctggtggtttcttccgccgt
gaaggccgtccaagcgaaggtgaaacgctgacttctcgtctgattgaccgcccgattcgc
cctctgttcccagaaggtttcctgaatgaagttcaggtgattgcgaccgtcgtttctgtt
aacccacaggttagccctgacatcgttgccatgatcggtgcctctgcggcgctgagcctg
tctggtattccgttcaacggccctattggtgttgcacgcgtcggttacctgaacgatcaa
tatgtcctgaacccaacgatggatgagctgaaagaaagccgtctggacctggtggttgca
ggcacagaaggtgcggttctgatggtggaatccgaagctgagctgcttagcgaagatcag
atgctgggtgctgtggtgtttggtcacgagcaacagcagatcgttatccagaacatcaac
tcactggttgctgaagcaggcaaaccgaagtgggaatggcatgcaccagaagttaacgtt
tctttagagcagcgtgtacaggctttgtctgaagcacgtctgggtgacgcttaccgcatc
actgaaaaacaagaacgttatgcacaagttgacgttatcaaagctgatgttgttgccgct
ctgcaagccgaagacgaaacgctgaatgcgggcgatatccaggaaattctgggtaacgtt
gagaaaaatgtcgtacgtagccgcgtgctggctggcgaaccgcgtatcgatggccgtgaa
aaagacatgattcgtggtctggatgtgcgtactggcgtactgccgcgtacccacggttct
gcactgttcacccgtggtgaaacgcaggcgttggtaaccgctacgttggggactgagcgt
gatgcgcagaatatcgatgaactgaccggtgaacgtaccgatcgcttcctgctgcactac
aacttccctccgtactctgtcggtgaaaccggtatggtcggttcacctaagcgtcgcgaa
atcggtcacggtcgtctggctaaacgtggcgtgttggcagttatgccgaaggcgaacgaa
ttcccgtacaccgtgcgtgtggtgtctgaaatcacagaatccaacggttcttcttccatg
gcgtctgtctgcggtgcttctctggcactgatggatgcgggtgtgccgatcaagtcagct
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaacttcgttgttctgtccgac
attctgggtgacgaagaccatctgggcgatatggactttaaagttgctggtagccgtgaa
ggtatcaccgcgctgcagatggatatcaagatcgaagggattacccgtgagatcatgcag
gttgctttgaatcaggccaaaggtgcacgtttgcacattctgggcgtgatggagcaggcg
atcagcacgccacgtggcgatatctctgaattcgcaccacgtattcacactatcaaaatc
agtaccgataagatcaaagacgtaatcggtaaaggtggttctgtgattcgtgcgctgacg
gaagaaacaggcacgacgattgaaatcgaagacgatggtactgtgaagatcgcttcaacc
gacggcgaaaaagcgaaacacgcgattcgtcgtattgaagagattactgccgaaatcgaa
gtcggccgcgtgtatcagggtaaagttacccgcatcgttgattttggtgctttcgtcgct
atcggcggcggcaaagaaggcttggtgcatatttctcagatcgccgacaagcgcgtagag
aaagtgactgactacctgcaaatgggtcaggaagtgccggtcaaggttctggaagttgat
cgccagggccgcgtgcgcttaagcatcaaagaagcaaatgcgcaaactcaggaagcggca
gctccgtcttctgaggaataa
DBGET
integrated database retrieval system
