Pectobacterium odoriferum: BCS7_03035
Help
Entry
BCS7_03035 CDS
T03424
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcv
Pectobacterium odoriferum
Pathway
pcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCS7_03035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcv03019
]
BCS7_03035
03009 Ribosome biogenesis [BR:
pcv03009
]
BCS7_03035
Enzymes [BR:
pcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCS7_03035
Messenger RNA biogenesis [BR:
pcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCS7_03035
Ribosome biogenesis [BR:
pcv03009
]
Prokaryotic type
rRNA helicases
BCS7_03035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIU87281
LinkDB
All DBs
Position
683256..685154
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQ
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDESRSDSRGDRRREPRDSREPRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGNGGERRERSFNRDSRDGAPRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggctgaacacctctatccttaatgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaacaacctgaaacctgaacttaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgtgaacgtcgtcgcactgtacggcggccagcgttatgacgtgcaactgcgc
gctttgcgtggcggagcacagatcgttgtgggtacgcctggccgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtgctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgcccaa
catcagactgcgctgttctctgcgaccatgccggaagcgattcgccgcattacgcgccgt
ttcatgaaagatccgcaagaagttcgcattcaatcaagcattactacgcgtccagacatc
agccagagctactggacggtgcagggcatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaagaatgcgacgctggaa
gtggccgaagccctggagcgtagcggttacaacagcgccgcgctgaacggtgacatgaat
caggcactgcgtgagcaaacgctggagcgtctgaaagatggccgtcttgatatcctgatc
gcaaccgatgttgcggcgcgtggtttggacgttgagcgtatcagcctagtagtgaactac
gatatcccgatggattccgagtcttacgttcaccgtattggccgtaccggtcgtgcaggt
cgtgcgggccgtgctctgttgttcgtcgaaaaccgtgaacgtcgcctgctgcgcaacgtt
gagcgcacaatgaagctgaccattccagaagtggaattgccaaatgcagaattgctgggt
caacgtcgtctggctaaatttgccgctaaagtacagcaacaactggaaagcagcgatctg
gatatgtaccgtgcgctgctgacaaaactgcagccgcaggaagagctggatgttgaaacg
ctggctgctgcgctgctgaaaatggcgcagggtgaacgtcctctgattctgccacccgat
ccggtattccgtcctcgtcgcgaattccgcgatcgtgatgagtctcgcagtgattcacgc
ggcgatcgtcgccgtgaaccccgcgattctcgtgaaccccgtgacggtgatcgtcctcag
cgtcgtgaacgtcgtgatgccggtgagatggaactgtatcgtattgaagtgggtcgcgat
gacggcgttgaagtgcgtcacattgttggcgccatcgctaacgaaggtgatatcagcagc
cgctatatcggtaacatcaagctgttcgcgtctcactcgacgattgaactgccgaaaggt
atgccgggcgacctgttatcacatttcacccgcacgcgtattctgaataaaccaatgaat
atgcagttgatgggtgatgcagttgcacagccagaacgtcgtggcggtggtcgtcctggt
ggcgaacgtcgtgatggtgcagcgccacgtcgctctttcggcggtggtgaacgccgtgaa
ggtaacggtaacggcggtgagcgccgcgagcgttctttcaaccgtgatagccgtgacggc
gctccacgagctccacgtcgtcgccctgctgacgcgtaa
DBGET
integrated database retrieval system
