Pectobacterium odoriferum: BCS7_19865
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Entry
BCS7_19865 CDS
T03424
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pcv
Pectobacterium odoriferum
Pathway
pcv00300
Lysine biosynthesis
pcv00470
D-Amino acid metabolism
pcv01100
Metabolic pathways
pcv01110
Biosynthesis of secondary metabolites
pcv01120
Microbial metabolism in diverse environments
pcv01230
Biosynthesis of amino acids
Module
pcv_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
BCS7_19865 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
BCS7_19865 (dapF)
Enzymes [BR:
pcv01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
BCS7_19865 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AIU90075
UniProt:
A0ABD6VQ63
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All DBs
Position
complement(4503605..4504429)
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AA seq
274 aa
AA seq
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MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE
PNFEPQQVPFRAVKAEKTYIMRADEHTVLCGVVSMGNPHCVIQVEDVDTAKVETLGPLLE
SHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLLSANVRV
SLPGGELDIQWNGPGHPLFMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgctaagatgcacgggttaggcaacgatttcatggttgttgatgccgttacg
caaaacgtttatttttcacccgaattgattcgccgtttggcggatcgacactgtggtgta
gggttcgaccaactgctggttgtcgagccgccctacgatcctgaactggattttcattac
cgcatttttaacgcggatggcagcgaagtggcacagtgtggtaatggtgcgcgctgcttt
gctcgctttgtccgcttgaaagggctgaccaacaagcgtgatattgccgtcagtacgcag
actggccggatggtactgtcggtgacggacgatgaactggtgcgcgtcaacatgggcgaa
ccgaatttcgagccgcaacaggtgccttttcgcgcggtcaaagccgagaaaacctacatc
atgcgtgcggacgaacacacggtgctgtgtggcgtggtgtcgatgggtaacccgcactgt
gtgattcaggttgaggatgtggacacggcgaaggtggaaacgctggggccgctgctggaa
agccacgagcgttttcccgagcgcgccaacatcggttttatgcaaattgttgatagccac
actgtccgtctgcgggtgtatgaacgcggtgcgggagaaacgcaggcgtgcggtagcggc
gcgtgtgctgctgtggcggtagggatccagcaggggttattgtccgcgaacgttcgcgta
tctctgccgggcggggagttggatatccagtggaatgggccgggacatccgttattcatg
accgggcctgcaacgcatgtctacgatggatttattcatttatga
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