Pectobacterium odoriferum: BCS7_20060
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Entry
BCS7_20060 CDS
T03424
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcv
Pectobacterium odoriferum
Pathway
pcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCS7_20060 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcv03021
]
BCS7_20060 (rho)
03019 Messenger RNA biogenesis [BR:
pcv03019
]
BCS7_20060 (rho)
Transcription machinery [BR:
pcv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BCS7_20060 (rho)
Messenger RNA biogenesis [BR:
pcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BCS7_20060 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIU90106
UniProt:
A0ABD6VQ25
LinkDB
All DBs
Position
complement(4543986..4545245)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactcttggcgaaaat
atgggactggaaaaccaagcccgcatgcgtaaacaggatattatcttcgctattctgaag
cagcatgctaaaagcggcgaggatattttcggcgatggtgtgctggagatattgcaggat
ggcttcggctttctccgctccgcagacagctcctacctcgcaggccccgatgatatctac
gtttctcccagccaaatccgccgttttaacctccgcactggtgacaccatttctggcaag
attcgtccgccgaaagaaggtgaacgctactttgcgctgctgaaagttaacgaagtcaac
tacgacaaacctgaaaacgcccgcaacaagatcctgttcgaaaacttaacaccgctgcac
gcaaactctcgtttgcgtatggaacgtggtaacggttcgacagaagatctgactgcgcgt
gtgctggatctggcttcgccgatcggccgtggtcaacgtggtctgatcgttgcaccgcca
aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcttacaaccatcct
gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggtgaagtggttgcgtcaacgtttgacgaaccggcttcccgtcacgtt
caggttgctgaaatggtgatcgaaaaagcgaagcgtctggttgagcataagaaagacgtt
atcatcttgctggactccattacccgtctggcgcgtgcctacaacaccgtagttccggct
tcgggcaaagtgttgaccggtggtgtggatgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgtcgaggaaggcggtagcctgacaatcatcgccaccgcgctg
gttgataccggttccaagatggacgaagtgatttacgaagaatttaaaggtacaggtaat
atggaactgcacctggcgcgtaaaatcgcagaaaaacgcgtgttcccagcgattgattac
aaccgttccggtacgcgtaaagaagaactgcttacgacctctgaagaattgcagaagatg
tggattctacgcaagatcatccacccaatgggtgagatcgacgcgatggaattcctcatc
aacaagttggcgatgacgaaaaccaacgatgaattcttcgatatgatgaaacgttcataa
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