Phascolarctos cinereus (koala): 110192391
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Entry
110192391 CDS
T05867
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110192391 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110192391 (CNOT1)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110192391 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110192391 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
110192391
NCBI-ProteinID:
XP_020819168
UniProt:
A0A6P5ID66
LinkDB
All DBs
Position
Unknown
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQNVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTAALGLPAVNSDPFVQRKLGASGLSQPTFQQSKMKPPDVSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYESKMYFFGIAALDR
FKNRLKDYPQYCQHLASISHFMRFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGSLLKDKDRLKNLEEQLSA
PKKDAKQPEALPPVTTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNP
TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMR
IAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYEKCITE
LEQHLHAIPPALGMNPQSQTLRSLLDAVVMSRNSRDAIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHS
RGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLLQDHDVRQNEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELSKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcgacacggc
ccggaggcagataggcatttattacgctgcctattttctcatgtggatttcagtggcgat
ggtaaaagtagcggcaaagattttcatcagactcagtttctgattcaggagtgtgcatct
ctgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaggttcaagaggtcatttttggtcttgctctcttgaattcttccagctcagat
ctacgaggttttgctgcccagtttgtcaaacagaagcttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctcccatctcctttttgggcagaagggagcttttggggttggacag
gaacaaatcgacgcttttcttaagacactgcgtagagattttccccaggaacgttgtccc
gtggtgcttgcaccactactttactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagctaaaaccatgatggagagctctctggcagacttcatgcaa
gaagtaggctatggcttctgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgagaggtcacagctgcccaagttgccagggttttgggaatgatggctcggact
cattcagggttgacagatggcattccattacagtctatctcagctcctggcagtggaata
tggagtgatggaaaagataaaagtgatggagcacaggcccacacctggaacgttgaagtc
ttgattgacgttctcaaagagttgaatccaagcttgaatttcaaagaagtaacctatgaa
ttagaccaccctggatttcaaattcgtgacagcaaaggacttcagaatgtggtatatggc
attcagagaggtctaggcttggaagtcttcccagtggaccttatttataggccttggaaa
catgcagagggccagctctccttcattcagcattcactgataaatccagagatcttctgt
tttgctgactatccctgtcacacagttgccactgatatcctcaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggacttgattgaatctctcttgcgactg
gcagaggtggggcagtatgagcaggtcaaacagctcttcagctttcccatcaagcactgt
ccggatatgttggtattggccttactacagatcaacacttcttggcatacactgcgccat
gaactcatctctaccctgatgccaattttccttggaaatcatcctaactctgccattatt
ttgcactatgcctggcatgggcagggacagtctccctcaattcgacagcttatcatgcac
gccatggcagaatggtatatgcgaggggagcagtatgaccaggccaaattgtcacggatt
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgtcgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcgtgtatgactttctta
aagagacggtgcccttccatcttgggtggccttgccccagagaaagatcagccgaaaagt
gctcaacttcctccagaaacactggcaacaatgttggcttgtctgcaagcttgtgcaggg
agtgtttctcaagagttgtcagagactatcctgaccatggttgccaattgcagtaacgtt
atgaataaggctcgacagccaccaccaggagttatgccaaaaggacgtccccctagtgca
agcagcttagatgccatttctcctgtacagattgacccacttgctgggatggcatctctt
agtataggaggttcagctgccccccacacccagagtatgcagggttttcctccaaatttg
ggttctgctttcagtacccctcagtcaccagcaaaagcctttccacctctttccactcca
aatcagactacagccttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttggcacaggcagcctgactggcataggaactgcggctctgggacttcctgcagtgaac
agcgatccgtttgtgcagaggaagctgggcgcctccggactgagccagcctacattccag
cagagtaagatgaaacctccggacgtgtcccaggtatggccagaggcgaaccagcacttt
agtaaagagatcgatgatgaagcaaacagctattttcagcgcatctataatcatccacct
catccaaccatgtctgtggatgaggtattagagatgttacagaggtttaaggactccaat
attaaaagggaacgagaagtgtttaattgtatgctgaggaacttgtttgaagaatatcgg
tttttcccccagtaccctgataaagagctgcacataacagcctgcctgtttggtgggatc
atagaaaaaggactggttacttacatggcacttggcctggccctgcgctatgttcttgaa
gccttacgcaagccttatgaatccaaaatgtatttttttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtactgtcagcacttggcctccattagtcac
tttatgcggtttcctcatcatctgcaggagtacatcgaatatggacagcaatctagagac
cctcctgtgaaaatgcagggttcaattaccacccctggaagtattgcacttgcccaagcc
caggcccaggcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcact
attgtaaccacctcaacaactactactgtggctaaaaccatcacaatcaccaggcccaca
ggagtcagctttaagaaagatgtgccaccatctattaatactacaaatattgataccctg
cttgtggccacggaccaaactgagagaattgtggagcctcctgaaaatgttcaggaaaaa
attgctttcatcttcaacaacctttctcagtcaaatatgacacaaaaggttgaagagctg
aaggaaacagtgaaagaggagtttatgccttgggtttcacaatatcttgtcatgaagaga
gtcagtattgagccaaactttcacagcctttattcaaattttcttgatactcttaagaat
cctgaatttaataagatggttctgaatgagacctacagaaatattaaagtgcttctgaca
tcagataaagcagcagccaacttctcagaccgctccttgctgaagaacttgggccactgg
ctggggatgatcaccctagccaaaaacaaacccatcttacatacagacttagatgtgaaa
tctttgctgttggaagcttacgttaaaggacagcaggaattgctgtatgtggtgcccttt
gttgccaaagtcttagaatccagtgttcggagtgtggttttcaggccaccaaatccttgg
acaatggcaattatgaatgtactagctgaacttcaccaggaacatgatttaaagctaaac
ttgaagtttgagattgaggtgctctgcaagaatctctccctggacatcaatgagctaaaa
cctgggagcctcctgaaagacaaggacagactgaaaaacttagaagagcagctctctgcc
cccaaaaaggacgccaagcagccggaggcacttcctcccgtcacaaccaccactacttct
accacacctgccaccagtaccacttgtacagctactgttcctccacagcctcagtacagc
taccatgacatcaatgtctattcactgggaggtctggcaccacacattactctaaatcct
acgattccattgtttcaggctcatccccagttgaagcagtgtgtacgtcaagcgattgaa
cgtgctgtccaagaacttgtccatccagtagtggatcggtcaattaagattgccatgact
acttgtgaacagattgtcaggaaggactttgcactggattctgaggagtcacgcatgcgt
atagcagctcatcacatgatgaggaacctgacagctggcatggctatgataacttgcagg
gaacctttactcatgagtatagctaccaacttgaaaaacagctttgccacagcactacga
gctgcatccccccagcagagggaaatgatggagcaagcagcagcacagctagctcaggac
aattgtgaattggcatgctgctttattcagaagactgcagttgaaaaagcaggtccagaa
atggacaagaggctagcaactgaatttgaacttcgaaaacatgcgaggcaagaggggcgc
aggtactgcgatcctgttgttttgacgtaccaggctgagcggatgccagagcagatcaga
ctgaaggttggtggtgtagacccaaaacagctggctgtttatgaagagtttgcacgtaat
gttcctggcttcttgcctaccaatgatttgactcagcctacaggatttttagctcagcct
atgaagcaagcttgggctaccgatgacgtagcacagatctatgaaaagtgtatcactgaa
ttggagcagcacctgcatgccatccctccagccttaggcatgaacccccagtctcagact
ctccggagccttctggatgctgtcgtaatgtcacgcaactctcgggatgccattgctgcc
ctgggcttgctgcagaaggctgtagagggcttgctagatgccacgagtggtgcagatgct
gacctactgctgcgttaccgggagtgtcacctcctcgtactgaaagcgttgcaggacggc
cgtgcgtatgggtctccgtggtgtaacaagcagatcaccaggtgcctgattgagtgtcgg
gatgagtataagtataacgtggaagcagtggagctgttgattcgcaatcacctagttaat
atgcagcaatatgatcttcacctggctcagtcaatggagaatggtttgaactacatggct
gtggcatttgctatgcagttggtgaagatactgttagtggatgaaaggagtgtggcccac
gtgactgaggcggatctgtttcataccattgagactctaatgaggatcaatgcgcactct
cgaggaaatgccccagaagggttgccccaactgatggaagtggtgcggtcaaactacgag
gctatgatcgaccgtgcacatgggggtcccaacttcatgatgcactcgggcatctcgcag
gcctccgagtatgacgatcccccaggcctccgggagaaggcagaatacctgctgcgggag
tgggtgaacctctaccactctgcagcggctggccgagatagcaccaaagccttctctgct
tttgttggacaggtagagcttttggagagaaagatgcaccagcaaggaatcctgaagact
gatgacctcataacaaggttttttcgtctgtgcactgaaatgtgtgttgaaatcagctac
cgggctcaggctgagcagcagcacaatcctgctgccaaccccacaatgatccgggccaag
tgttaccataacctggatgcgtttgtacggctcattgcactgctggtcaagcactcgggg
gaagccactaacacagtcaccaagatcaatctgttaaacaaggttcttggtatagtagtg
ggtgtccttctgcaggatcacgatgttcgacaaaatgagtttcagcaacttccgtaccac
cgaattttcatcatgctgctcttagaactaaatgctcctgaacatgtgttggaaaccatt
aatttccagacactgacagctttctgcaatacattccacatcttgaggcctactaaagcc
ccaggctttgtgtatgcctggcttgaactgatctcacatcggatatttattgcaagaatg
ctggcacacacaccacagcagaagggctggcctatgtatgcacagctattgattgattta
ttcaagtatttagctcccttccttagaaatgtggaactcagcaaacctatgcaaatcctc
tataagggtactttacgagtgctgctggttctcctgcatgatttcccagaatttctttgt
gactaccactatggattctgtgatgtgatcccacccaattgcatccagttaaggaatctg
atcctgagtgcctttccacgaaacatgaggctaccagacccattcactcccaacctgaag
gtggacatgttgagtgagatcaacattgctcctcggatcctcactaatttcactggagtg
atgcctcctcagttcaaaaaggatttggattcctatctgaaaactcgatcgccagtcact
ttcctgtctgatttgcgcagtaacctacaggtatcaaacgaacctggcaatcgctacaac
atccagctgataaacgcactggtgctctatgtcggtactcaggccatcgcccacatccac
aacaaaggcagcacgccgtccatgagcaccatcactcactcggcgcacatggacatcttc
cagaacttggctgtggacctagacacggaaggtcggtacctcttcttgaatgcaattgcc
aatcagctgcggtatccaaacagccacactcactacttcagttgtaccatgctgtacctt
tttgcagaggccaacactgaagctatccaggaacagatcaccagggttctcttggaacgg
ttgattgtaaataggccacatccttggggtcttctcattaccttcattgagctgattaaa
aatccagcatttaagttctggaaccatgagtttgttcactgtgccccagaaattgaaaag
ttgttccagtcagttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaa
gggactggtgccagttag
DBGET
integrated database retrieval system
