Phascolarctos cinereus (koala): 110192396
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Entry
110192396 CDS
T05867
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110192396 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcw03041
]
110192396 (DHX38)
Enzymes [BR:
pcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110192396 (DHX38)
Spliceosome [BR:
pcw03041
]
Complex C
Other components
Step II factors
110192396 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
PhoH
SoDot-IcmSS
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
110192396
NCBI-ProteinID:
XP_020819182
UniProt:
A0A6P5IA84
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MEDASDEGEASIHRLEGIDQETQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLAALK
RREREEKDDGEDKKKSRVSSYKDWEESKDDQKDSEEEGGDQASRSSRKDRHYRAARVETP
SHPGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERTRDRDYDRKRDRDERDRSRH
SNRSDRDGGSERSSRRSEPESPRHRPRDAATPSRSNWEEEDSGYGSSRRSQWESPSPVPS
CRDSERSHRSSSTRDKERSVRSKCPDDTPLPTPSYKYNEWADDRKHLGSTPRLSRGRGRR
EDGEDGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVKKREQHLHK
QKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLLVHNLVPPFL
DGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGD
IMGLKKEEEPDKPLTEDGKVDYRTEQKFANHMKKKSEASSEFAKKKSILEQRQYLPIFAV
QQELLTIVRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRV
SEEMGGSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDHYSAIIMDEAHER
SLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSK
TPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLP
IYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGM
DALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLL
LKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAMDNTGGLTSTGRLMVEFPLDPALSK
MLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQ
WKNNNYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIIRKCVCAAY
FHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVD
GEWLAELGPMFYSIKHAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRNPLG
SVRSVKIYTPGRKEQGEPASPRRTPARFGL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgccagtgatgagggtgaggcctcaattcatcggctagaaggcattgaccaa
gagacacaggttggtggtctcatttgcaagaccaaaagtgcagctagtgagcagcatgtt
ttcaaagcccctgcacctcgtccctcattgctgggattagatctgttggctgcattaaaa
cggagggaacgagaggaaaaggatgatggggaagacaagaagaagtccagagtctcttcg
tacaaggactgggaggaaagcaaggatgatcagaaggattctgaggaggaagggggtgac
caggccagccgaagcagcaggaaagacagacattatcgagctgcccgggtagagacacca
tcacatcctggtggtgtgagtgaagagttctgggagcgcagcaggcaaagagaacgggaa
agacgggaacatggtgtctatgcctcctccaaagaagaaaaggaccggaaaaaggagaga
actcgggatcgagactatgaccggaagagagatagagatgagcgggacaggagtcggcac
agcaaccgatcagaccgagatggaggctcagaacggagcagcaggaggagtgaaccagag
agcccaagacaccgacccagagatgcagcaaccccttcacgctctaattgggaagaagag
gatagtggatatggtagctcccgacgttctcagtgggaatcaccctccccagtaccttcc
tgtcgggattctgagaggagtcaccggtcttcttctactcgagataaagaaaggtctgtg
aggagcaagtgcccagatgacacacctctgcctaccccatcatataagtacaatgaatgg
gctgatgacagaaaacaccttgggtctacccctcggctttccagaggccgagggaggcga
gaagacggagaggatggaatctcttttgacactgaagaggagaggcaacaatgggaagat
gaccagaggcaagccgatcgggactggtacatgatggatgagggatatgatgagtttcat
aacccactggcttactcctcagaagactatgtgaagaaacgagaacagcacctgcacaaa
cagaaacaaaaacgcatttcagcccagcggagacagatcaatgaggacaatgagcgctgg
gagactaaccgcatgctaactagtggtgtggtccatcggctggaagtggatgaagatttt
gaggaagataatgcagccaaggtgcatctgctggtgcataatctggtgccaccgtttctg
gatgggcgcattgtttttaccaaacagccagagcctgtgattccagtcaaggatgccact
tctgacttggccattattgctcgaaaaggcagccagacagtacgcaaacacagggaacag
aaggagcgtaaaaaggcccagcacaagcattgggaactggctggtaccaaattgggagat
attatgggcctcaagaaagaggaagaaccagataagcctttgacagaagatggcaaagta
gattacaggacagagcagaaatttgctaatcatatgaagaaaaagagtgaagccagcagt
gagtttgcaaagaagaagtcaattctggagcagagacagtacctgcccatttttgcagtg
cagcaggagctgctcaccatcgtcagagacaacagcattgtgatagtggtgggggagaca
gggagtggaaagaccactcagctgactcagtacttacatgaagatggttatacagactat
ggcatgattggctgtacccagccccgacgggtggctgccatgtcagtagccaagagagtc
agtgaagagatgggaggaagccttggagaggaggtgggttacgctatccgctttgaggac
tgtacttccgaaaacactgtgataaaatacatgacagatgggatcctgcttagagagtcc
ctgcgagaggccgacctggatcattatagtgccattatcatggatgaagcccatgagcgt
tcgctgaacacagatgtgctgtttgggttgcttcgagaggtagtagctcggcgctcagac
ctgaagcttattgtcacttcagccactatggatgcggagaaatttgctgctttctttgga
aatgttcccatctttcacattcctggccgaaccttccccgttgacatcctcttcagcaag
acccctcaggaggattacgtggaggctgcagtgaagcagtccttgcaggtgcacctctct
ggggctccaggggacatcctcatcttcatgcccggacaagaggacattgaggtgacctcg
gaccagatcgtggaacatctggaggaactggagaatgctcctgccctggctgtgcttccc
atctactcccagctgccctctgacctccaggccaagatcttccagaaggctccagatggc
gtcaggaaatgtattgttgccaccaatattgctgagacttcactgactgttgatggcatc
atgtttgttattgattctggctactgcaaactaaaggtattcaaccccaggattgggatg
gatgctctgcagatctaccccattagccaggccaatgctaaccagcgatctgggagagct
gggaggacgggcccaggtcagtgcttcaggctctacacccagagtgcatataaaaatgag
ctcttgaccacgacagtacctgagattcagagaactaatttggccaatgtcgtgctgctg
ctcaaatctttaggggtccaggacttgcttcagttccactttatggacccacccccagaa
gacaacatgttgaactccatgtaccagctctggatcctgggggccatggataacacaggc
ggtcttacgtccactgggcgactgatggtagagtttcccctggatccagccctctctaag
atgctgattgtctcctgcgacatgggttgtagctctgagattctgctgattgtctccatg
ctctcagtcccagccatattctatagacctaagggccgagaagaggagagtgatcaaatt
cgggagaaatttgctgtccctgagagtgatcatttgacctacttgaatgtgtacctgcag
tggaagaacaataattactccactctgtggtgtaatgaacacttcatccatgccaaggcc
atgaggaaggttcgagaggtgcgggcccaactgaaggacatcatggtgcagcagcgaatg
agcttagcttcctgtggcacagactgggacatcataagaaagtgtgtctgtgctgcctat
ttccatcaggcagccaagctaaagggaattggggagtatgtgaatatccggacggggatg
ccttgccatttgcatcctaccagctctctcttcggaatggggtatactccagactacatt
gtatatcatgaattggtcatgactactaaggaatacatgcagtgtgtgactgctgtggat
ggggagtggctagcagagctgggccccatgttttatagcattaaacatgcaggcaagtca
cgccaggagaatcgccgccgggccaaagaggaagcatctgctatggaagaggagatggca
ttggctgaagagcagttgcgagcgcggcggcaggagcaggagaagcgtaaccccctgggc
agtgtgaggtctgtgaagatctacacgcctgggcggaaggagcaaggggagcctgctagc
cctcgccggaccccagcccgctttggactctga
DBGET
integrated database retrieval system
