Phascolarctos cinereus (koala): 110197203
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Entry
110197203 CDS
T05867
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcw
Phascolarctos cinereus (koala)
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcw03009
]
110197203 (IGHMBP2)
03012 Translation factors [BR:
pcw03012
]
110197203 (IGHMBP2)
Enzymes [BR:
pcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110197203 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
110197203 (IGHMBP2)
Ribosome biogenesis [BR:
pcw03009
]
Eukaryotic type
Other ribosome biogenesis factors
110197203 (IGHMBP2)
Translation factors [BR:
pcw03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110197203 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
AAA_16
nSTAND3
AAA_22
ResIII
UvrD-helicase
IstB_IS21
Helicase_RecD
DEAD
SLFN-g3_helicase
Flavi_DEAD
AAA_25
AAA
PhoH
DnaB_C
AAA_18
UvrD_C_2
AAA_33
bpMoxR
NTPase_1
ATPase
Motif
Other DBs
NCBI-GeneID:
110197203
NCBI-ProteinID:
XP_020826556
UniProt:
A0A6P5J5S1
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MAAVESFVNRQLELLEQEREAELQEKRAWQESVSPKELQRRGVCLLKLQVVSQRTGLYGR
LLVVLEPRKWDPGATLPCNSFGPGDIVGLYESAPEAATLLATGILTQITQRSVTVAFDES
QEGSLALDAGGLYRLLRLANDITYKRLKKALNALNQYHSGPAAPLIDVLLCTSEPSSPAP
TQPLMFCNGSLDTSQKEAVGFALAQKELAIIHGPPGTGKTTTVVEIVLQAVRQGLKVLCC
APSNIAVDNLVERLAAQKLRVLRLGHPARLLDAIQHHCLDAVLARSDHAQIVADIRKDID
QVKSKKTLEKRDNSYGRNELKLLRKELREREEAAMLGSLSRADVILATNTGASPDGPLKL
LPDSYFDVVVIDECAQALEASCWIPLLKARKCILAGDHQQLPPTIVSHQAAKGGLSLSLM
ERLIERHGERVVRMLTVQYRMHQAIMQWASEELYRGQLAAHPSVAGHLLKDLPGVAATEE
TSIPLLLVDTAGCGLLELEDEDEQSKGNPGEVRIVSLHVQALVDAGVQVGDVAVIAPYNL
QVDLLRQQLSSKYPQLEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAIVCDSRTISGDAFLKKLVDYFTLRGEVRTAFEYLDDIVPDNYSHEGPRGPGQVG
RKPGPRRRQESQTARGAQKCGRGGAPQPAPEGPRVSGGGRPEGTGDLFRAMVVDFLESTR
TLLEFPASLNAHDRMLVHRLAEEHGLKHESVGAGKKRYISVCKKGAPATAAAAPATAAST
ATPATAAVTTTSAALATTTATMAPPPTGIESEGWELQPGCLGPGTPGLAQRDQGIHGNPG
DSPNQKSLQRERGQREKAGPGQLARERQDAAGSGAPKVSGRKKGKERRGHQGENQAGEED
FDALVSAAIKADNSCAFPRCRASVVTLGQLCPHCGRRFCLSHHIPEVHGCGEKARSHARQ
RISREGVLYAGSGTKNKSVDPMKRVHLQKRLDQKLVELSSQRKSKKKDKDK
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtggagagcttcgtgaaccggcagctggagctgctggagcaggagcgggag
gcggagctgcaggagaagagggcctggcaggagagcgtctccccgaaggagctgcagcgc
cgtggggtctgcctgctgaagctgcaggtagtgagccagcggacggggctgtatggaagg
ctgctcgtcgtcttggagcccagaaaatgggaccctggggccaccctgccctgcaatagc
tttgggcccggtgacattgtggggttgtatgagagcgctcccgaggcagccactctgctc
gccaccggcatcctgacgcagatcacgcagcggtcggtgactgtggccttcgacgaatcc
caggagggctcgctggccttggatgcaggcggcctttaccggctgctcaggctggccaat
gacatcacgtataagcgcctcaaaaaagctctgaatgccctaaaccagtatcactcgggt
ccggccgcgcctctcatagatgttctcctctgcacttctgagccgagcagcccagctccg
acacaaccgctgatgttctgcaacggctccctggacacgtcacagaaagaggccgttggc
tttgcactggcccagaaagagctagccatcatccacggcccgcccggcaccggcaagacc
acaacagtggtggagattgtgctgcaagctgtacgccagggcctgaaggtcctgtgctgt
gccccttccaacattgctgtggacaacctggtggagaggctggccgcacagaagctaagg
gtcctccgcctcgggcaccccgcacgccttctggatgccatccagcaccactgccttgat
gcggtcttggcccgcagcgaccatgcccagattgtggcagatatccggaaggacattgac
caggtgaaaagcaagaagaccttggagaagagagacaatagctatggtcgcaacgagctg
aagctgctaaggaaagagctgagggagagagaagaagccgccatgcttggaagcctctct
cgggctgatgtcatcctggccacaaacacaggcgcgtcccccgacggcccgttgaagctg
ctccccgacagttactttgatgtggtggtgatcgacgagtgtgcccaggcgttggaagcc
agctgttggatccccctgctgaaggccaggaagtgcatcctggccggagaccaccagcag
ctaccccccaccatcgtctcccaccaagctgccaaagggggtctgtccctcagcttgatg
gagcgcctgattgagcgccacggggagagggtcgtgagaatgctgacggtccagtaccgc
atgcaccaggccatcatgcagtgggcctcggaggagctgtaccgcgggcagctcgctgcc
cacccctcggtggccggccatcttctgaaggacctgccgggggtcgctgccaccgaagag
acgagcatccccctgctgctcgtcgacactgctggctgcggcctgttagagctggaggat
gaagacgagcagtccaaggggaacccaggtgaggtccgaattgttagtttgcacgtccag
gccttggtggacgctggagtccaagtaggtgacgttgctgtcatcgctccctacaacctg
caggtggacctgctcaggcagcagctttcctctaagtatccacaactggagatcaaatct
gtagatggctttcaaggaagagagaaggaggcggtcatcttgtcctttgtgcgatccaac
cggaagggtgaggtcggttttctggcggaggaccgaaggatcaatgtggcggtcactcgt
gcccggcgccacgtcgccatcgtctgtgattcccggaccatcagcggtgacgccttcttg
aagaagctggtggattacttcactctgagaggcgaagtccgcacagccttcgagtacctc
gatgacattgtccctgacaactactcccacgaaggccctcggggccccggccaggtgggc
aggaagcccggccccaggcggcgccaggagagccagacggcgcgaggggcccagaagtgt
ggcagaggcggagccccccagcccgcgccagagggccccagggtcagtggggggggccgg
cctgagggcactggggacctcttcagagccatggtcgtggacttcctggagagcaccagg
accctgcttgagttccctgcgtccttgaacgctcacgataggatgctggtccatcgcctg
gcagaggagcacgggctaaagcacgagagcgttggtgcagggaagaagagatacatctct
gtttgcaaaaagggggcccctgccacggctgccgccgcccccgccacggctgcctccact
gccacccccgccacagctgctgtcaccaccacctctgctgcgcttgccaccaccacagcc
accatggcgccgcctccaacagggatagagagtgaggggtgggagctccagcccgggtgc
ctgggcccgggaacacctggcctggcccagcgtgatcagggcatccacggcaaccctggg
gacagtccgaatcagaagtctctgcagcgagaaagaggacagagggagaaagctgggcct
ggccagctggccagagaacgccaagatgctgccggctccggggcacccaaagtgtcagga
aggaagaagggaaaggagaggagaggccaccagggagagaatcaagcaggtgaggaagac
tttgacgccctggtctctgctgccatcaaggctgataacagctgtgcgttccccaggtgc
agagccagcgtggtgacattgggccagctctgcccgcactgtggtcggcgcttctgcctc
agccatcacatccccgaggtccatgggtgtggcgagaaagcgcgatcgcatgcccgacag
aggattagcagagagggggtcctgtatgccggcagcgggacaaagaacaaatctgtggac
cccatgaagagagtccatctccagaagaggctggatcagaagctcgtggagctgagcagc
cagaggaaaagtaaaaaaaaggacaaggacaaatga
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