Phascolarctos cinereus (koala): 110198839
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Entry
110198839 CDS
T05867
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110198839 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcw04147
]
110198839 (COL18A1)
00535 Proteoglycans [BR:
pcw00535
]
110198839 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pcw00536
]
110198839 (COL18A1)
Exosome [BR:
pcw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110198839 (COL18A1)
Proteoglycans [BR:
pcw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110198839 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pcw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110198839 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110198839
NCBI-ProteinID:
XP_020829014
UniProt:
A0A6P5JD40
LinkDB
All DBs
Position
Unknown
AA seq
1537 aa
AA seq
DB search
MAPLQSSLALLLLLVAHCPLSRAQFFNWWTLKETEATVGPLLPTSGPQVKSTPFAGPTVP
SATLAAQTGILRPIPEEQPASGLWTQPDPEASEATGAVTPLRAPPARTDLKEENIAGVGA
KILNVAQGIRSLVQFWDEKSNGESSSKGEAVAADPPATLPPLPSASGPGMELRDAGKGST
GAPTPAGWTDAVHLTAATSPLGNRSPALPLGWPSAPPPENFSAEVSLPQLIGQPPPKHIS
QIDDPDIGLAYVFGPNANSGQVARYHVPNPFYRDFSLLFHIKPTSERAGVLLALTDAAQA
VIAMGVKISEPYSGKQDVLFFYTEPGVGETRTAASFSLPSFVNQWTRFAISVDGDEVALY
VNCKEIQRLPLDRSLQELELEPGAGLFVAQAGGADPDKFQGVISELKMRGDPRVTLLQCL
DDDDDDSDGASGDFGSGADEQGGPSGSDMGPPLSPSLPMPPPVTLLPLDTTTMSLQPGLV
KVEGAHVSSSGARLDSRGEEGARGPTRPEGTLDQARRITEEGTRYMSPGLKGQKGEPGVQ
GPPGPVGPQGPAGPAIPSPDGSTVQQVPGPQGPPGPTGPPGKNGEPGDPGEDGKPGEMGP
QGFPGTPGDVGPKGDKGDPGTGPRGPPGPPGPPGPPGPAFRPDKLTFIDMEGSGFGGDPE
SLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSTDGPAPPGLPGVPGRDGSPGLRGPPGPPG
LPGKDGQPGEQGQKGDRGDMGSPGPQGSKGDIGPVGAPGETGLAGLPGPMGPRGLPGPPG
PPGPPGAGWAAGFDDMEGSGLPFWTAVPGTRGAEGPQGLPGFPGLKGDRGSVGQPGEKGD
PGFPGPPGSEGMPGPQGPKGDPGSQGQKGEPGKDGVGQPGPPGPPGPPGEMTYVSEEGKT
FASVSGREGRPGYAGFPGPAGPKGDTGAHGPQGSPGAKGEKGEPGSVLTLSEKGAKGDQG
YRGPPGPYGRPGHKGEIGIPGRPGRPGMNGLKGEKGEPADANRAVGPRGPPGLPGPPGPP
GAPGLLGTSFYDNNGFLEPGRPGPPGLPGYQGSPGPKGDKGEAGPAGPPGILPYDFSTLV
EHMKGEKGEEGVKGEKGEPGSGGFFSSGVPGLPGPPGPPGYPGVPGPKGESIRGQPGPPG
PQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTSGTSSGQL
RIWTSYQAMLNKAHEVPEGWLVYVAEREELYVRVRRGFKKVLLEAQTVLSRGADNEVAVL
QPPIVEYSPGNSAPSGSHIQDGNLPYPHRGYPHSTAKPWRADDIQANHPRFSEHGGHHPP
YHGVQQHPHDRIPSYHGSYTNVRPAQPTASPLHVHHDFQPALHLVALNGPQTGSMRGIRG
ADFQCFQQAREVGLMGTFRAFLSSRLQDLYSIVRRADRGSVPIFNLQDEMLFDSWEALFS
GSEGQLKPGSRILSFDGKDVLRHSAWPQKSVWHGSDAKGRRLTESYCETWRTDEGAATGQ
ASSLFSGKLLEQKAVSCRNSFIVLCIENSFMTSSSKK
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctctccagagcagcctggctctcctcctcctgctggttgctcactgtcccctc
tccagggctcagttttttaactggtggacacttaaggagacagaagccacagtaggacct
ctcctcccgacctcagggcctcaggtcaagagtaccccctttgcggggcccacggtgccc
agtgccaccctggccgcccagacaggcatcctcaggcctatcccagaggagcagccggca
tctgggctgtggactcagccggaccctgaggcctcagaggccacaggtgctgtgacccct
ttgcgggcaccccctgccaggacagacctcaaggaagaaaacattgccggtgtgggcgcc
aagatcctgaacgtggcccagggcatccgcagcttggttcaattttgggacgagaagagc
aatggcgagagctcttccaagggtgaggcagtggctgctgacccccctgccacccttccc
ccactgccctctgcgtctggacctgggatggagctgagagatgctgggaaggggagcaca
ggtgccccgactccggctggctggacagacgccgtccacctgacagcggctacctctcct
ctgggaaacaggtccccagcactgcccttggggtggccctcagcccctcccccagaaaac
ttcagtgccgaagtgagcctccctcagctcattgggcagcctccccccaagcacatctcc
cagattgatgaccctgacatcggcctcgcctacgtctttgggcccaatgccaacagtggc
caggtggcgcggtaccacgtgcccaaccccttctaccgagacttctccctgctctttcac
atcaagcccaccagtgagcgggccggggtgctgctggcactcaccgacgcagcccaggcg
gtcatcgctatgggcgtgaagatctcagaaccctacagtggcaaacaagacgtgctcttc
ttctacacggagccgggtgtcggggagacacgcacggcggccagcttcagcctgccgtcc
tttgtgaaccagtggacgcgctttgccatcagtgtggatggcgacgaggttgccctgtac
gtgaactgtaaggagatccagaggctccctctggaccggtctttgcaggagctggagctg
gagcctggtgccggcctctttgtggcccaggcgggaggagccgaccccgacaagttccag
ggggtgatctccgagttaaagatgcgaggggaccctcgggtgactctgctgcagtgtctt
gatgatgacgatgatgacagtgacggcgcgtctggagactttggaagtggagcggacgag
cagggaggaccctcagggtcagacatggggcctcccctgtcacccagcctccccatgcct
cctccagtcacgttgctgcccctggacacgaccaccatgagtttgcagccgggccttgtc
aaggtggagggcgcccacgtatcttcctcaggagctcggcttgattcccgtggagaggag
ggggctagaggccccacaaggcctgaagggacactggaccaggccagaagaataacagag
gaaggtaccagatacatgtctccaggcttgaagggacagaaaggtgaacctggggtccag
ggcccacctggacctgttggtccccagggacccgccggccctgctatcccgagtccagat
ggttccacggtgcagcaggtgcctgggccacaaggacccccagggcctactggaccccct
gggaagaatggagagcctggtgatcctggtgaggatggaaaacctggtgagatggggcct
cagggtttcccaggaactccaggagatgtggggcccaagggcgacaagggagatcctggc
actgggccgaggggcccacctggcccaccagggcccccaggacctcctggacctgctttc
agacctgacaagttgacttttatcgacatggaagggtctggctttggaggggacccagag
agtctacggggtccgcgaggtttcccagggcccccggggcctccaggcgtgccaggcttg
ccaggagagccagggcggtttggaatgaacagcaccgacggccccgcccccccaggcctt
cctggggtgccaggcagagatggctcccccggactccgaggacccccgggccccccaggc
cttccaggaaaggatggacagcccggggagcaagggcagaaaggagatcggggtgacatg
ggctccccaggaccacagggcagcaagggtgacatcggcccagttggtgctcctggtgaa
acaggcttggctggtctccctggacccatgggccctcgggggctgccgggcccccctggc
cctccagggccacctggcgcaggctgggcagctggatttgatgacatggaaggttctggg
ctgccgttctggaccgctgtccctggcacccgcggggccgaaggaccacagggactacct
ggatttcctgggctcaagggagatcgtggctcggttggacaacctggagaaaagggtgat
cctggctttcctgggccacctgggagtgaaggcatgccagggcctcaggggccaaaagga
gatccaggaagccaggggcagaagggagaaccagggaaggatggtgtggggcagcctggc
cctcccgggcctcccgggcctccaggagagatgacctacgtatccgaggaagggaaaaca
tttgcaagcgtgtcagggcgtgagggcagacccggctatgctggattcccgggcccagct
ggtccaaagggagatactggtgctcatggaccacagggttcccctggcgccaagggggag
aagggcgaacctggaagtgtcctcacactttccgagaaaggagccaagggggaccaaggc
tacagggggcccccgggcccatatggacgccctgggcacaaaggcgaaattggaattcct
ggaagaccaggccgcccgggcatgaacggactgaagggggagaagggtgagcctgcagat
gccaacagagccgtgggacccaggggccctcctggactcccagggcccccagggccccca
ggggccccaggcctccttgggacttccttctatgacaataatggattcctcgagcctggc
cgccctgggcctccaggattgccgggttaccaaggttcccctggacccaagggtgacaag
ggagaagccggacctgctgggccaccaggcattttgccatatgattttagcactttggtg
gagcacatgaagggcgaaaagggggaagaaggcgtgaaaggggaaaagggtgaacctggc
agtggaggatttttcagctctggagtcccaggcctgcccggccccccgggccccccgggg
taccccggtgttccgggtcccaagggagagagcatcaggggtcagcctggtcccccagga
cctcaggggcctccaggcataggctatgaaggacggcagggcccccctgggcctcctggc
cccccaggaccaccgtcattcccaggaccccacaggcagactatcagtgtccctggcccc
ccaggtcccccaggcccccccggacccccagggacttcagggacatcatcagggcagctg
agaatctggacaagctaccaggccatgctcaacaaagcccacgaggtgcctgagggctgg
ctggtctatgtggcggagagggaagagctgtacgttcgcgtgcgcagaggcttcaagaaa
gtcctgctggaggcccagaccgtgctctctcgtggggcggataatgaggttgctgtcctg
cagccacccatcgtagagtactcaccagggaactcggccccgtcaggctcccacattcaa
gatggcaacctcccctatcctcaccggggctacccacattcaactgccaagccctggcga
gccgacgacatccaggccaaccacccgcgattctccgagcatggcggtcaccacccgcca
taccacggcgtccaacagcaccctcacgaccgcatccccagctaccacggctcctacacc
aacgtccggcctgcacagcccacggcctctccgctgcacgtgcaccatgacttccagccc
gcactccacctcgttgctctcaatggtccccagacgggcagcatgcgtggcatccgtggg
gctgacttccagtgctttcagcaggcccgggaggtgggcttgatgggcaccttccgggcc
ttcctgtcctccaggcttcaagacctctacagcatagtccgcagggcggaccgcggcagt
gtgcccatcttcaatctccaggacgagatgctctttgatagctgggaggccctgttctca
ggctcagaaggccagctcaagcccggttcacgcatcctctccttcgacggcaaggatgtc
ctgcggcactctgcctggccgcagaagagcgtgtggcatggatccgatgccaagggacgc
cggctgacagagagctactgtgagacctggcggacagacgaaggggccgccaccggccag
gcgtcctccctgttctcgggcaaactgctcgagcagaaggctgtgagctgccgaaacagc
ttcattgtcctctgcatcgagaacagcttcatgacctcctcctccaagaagtag
DBGET
integrated database retrieval system
