Phascolarctos cinereus (koala): 110199293
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Entry
110199293 CDS
T05867
Symbol
DDX39B
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03013
Nucleocytoplasmic transport
pcw03015
mRNA surveillance pathway
pcw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110199293 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
110199293 (DDX39B)
03015 mRNA surveillance pathway
110199293 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110199293 (DDX39B)
03041 Spliceosome [BR:
pcw03041
]
110199293 (DDX39B)
Enzymes [BR:
pcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110199293 (DDX39B)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110199293 (DDX39B)
Spliceosome [BR:
pcw03041
]
Complex C
Other components
EJC/TREX
110199293 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110199293 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110199293
NCBI-ProteinID:
XP_020829716
UniProt:
A0A6P5JF26
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgatgtggacaatgaactcctcgattatgaagatgatgaagtggagaca
gcagctgggggggatggagctgaggcccctgcaaagaaagatgtgaaaggttcctatgtc
tccatccacagctctggattccgtgactttctacttaagccagagctgctccgggccatt
gtagattgtggctttgagcatccatctgaagtccagcatgagtgtattcctcaggccatc
ttgggaatggatgtcttgtgccaggccaagtcaggcatgggaaagacagctgtgtttgtg
ctggccacgctgcagcagctggagccagtcactggtcaggtttctgtgttggtgatgtgt
cacactcgggagctggcctttcagatcagcaaggagtatgagcgcttctccaaatacatg
cctaatgtcaaggtggcggtgttttttggtggtctatcaataaaaaaggatgaagaggta
ctgaagaagaactgcccacacattgtcgtggggaccccaggccgtattttagccctggcc
cgaaataagagcctcaatctcaaacacattaaacattttatcttggatgagtgtgacaaa
atgctcgaacagctcgacatgcgtcgggatgtccaggaaattttccgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccctgagcaaagagatccgccctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggctgcagcagtactacgtgaagctgaaggacaatgagaagaaccgaaaactcttcgac
ctcctggatgttctggagttcaaccaggtggtgatcttcgtgaaatctgtgcagcgctgc
attgccctggcccagctcctagtggaacagaacttcccagccattgccatccatcgtggg
atgccccaagaggagaggttgtcccggtatcaacagttcaaggattttcagcgtcgtatc
cttgtggccactaacctgtttggccggggcatggatattgaacgagtaaacatcgctttc
aactatgacatgccagaggactcagacacctacttacacagggtggctagagcaggccgg
tttggtacaaagggtttggccatcacatttgtgtcagatgaaaatgacgccaaaatcctc
aatgacgtccaggatcgcttcgaggtcaacatcagtgaactgcctgatgagatagacatt
tcttcctacattgagcagactcggtag
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integrated database retrieval system
