Phascolarctos cinereus (koala): 110203360
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Entry
110203360 CDS
T05867
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110203360 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110203360 (XAB2)
03041 Spliceosome [BR:
pcw03041
]
110203360 (XAB2)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110203360 (XAB2)
Spliceosome [BR:
pcw03041
]
Complex B
Other components
Prp19-related factors
110203360 (XAB2)
Complex C
110203360 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_16
TPR_1
TPR_NPHP3
RPN7
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
110203360
NCBI-ProteinID:
XP_020835498
UniProt:
A0A6P5JQ92
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MPEIGDAAPAEAKLKARPERADLFFEEEDLQYEEEILRNPFSVKCWFRYIEFKQSSSQAV
LNLLYERALKELPGSYKLWYHYLKARRAQVKRRCVTDPAYEDVNNCHERALVFMHKMPRL
WLDYCQFLMEQGRITRTRRTFDRALRALPITQHSRIWPLYLRFVRSHPLPETAVRVYRRF
LKLSPESAEEYIEYLRSIDRLDEAAQRLATVVNDERFVSKEGKSNYQLWHELCDLISQNP
DKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDF
TQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQ
NPHHVHEWHKRVALHQGRPREVINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLD
DARTILEKATKVNFKQVEDLASVWCEYGEMELRHDNYDQALRLLRKATALPARRAEYFDG
SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYERILDLRIATPQIVINYAMFLEEHS
YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA
KTLYLLYARLEEEWGLARHAMAVYERATRAVEPSQQHEMFNIYIKRAAEIYGVTHTRSIY
QKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGTFWQTWKDFEI
RHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLL
EHRAEQLAAEAERDQPSKGKILFVRSDASRTELAELAQRANPEEIEIGEEEDEEEEEGLQ
PNEVPLEQQSVPATVFGSLRDD
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagatcggggatgcagctccagccgaggcaaagctgaaggctcggcctgagagg
gccgacctcttcttcgaggaggaagatttacagtatgaggaggaaatccttcgcaaccct
ttctctgtcaagtgttggtttcggtacatcgagttcaagcagagttcatcgcaggctgtg
ctcaatctgctctatgagcgagccctcaaggagttgcctgggagttacaagctgtggtac
cactacctgaaagcccgtcgggcccaggtgaagcgtcgctgtgtgactgaccctgcctat
gaggatgtcaacaactgccatgagcgggccttggtcttcatgcacaagatgccgcgtctg
tggttggattactgccagttcttgatggagcagggccgcattactcggacccggcgcacc
ttcgaccgtgccctgagagctctgcccatcactcagcactcacgcatctggcccctctat
cttcgctttgtacgttcccaccctctgcctgagactgcagtgcgtgtataccgccgcttc
ctcaagctgagccccgagagtgcagaggaatacatcgagtacctgcgctccatcgaccgg
ctggatgaagcagctcagcgcctggcaaccgtggtcaatgatgaaagatttgtctccaag
gaaggaaagtccaactaccagctgtggcatgaactgtgtgacctgatctcccaaaatcct
gacaaagtgcagtccttaaacgtgggcgccatcatccgagggggcctcacccgcttcact
gaccagctcggcaagctgtggtgctcactggccgactactatatccgaagtggacatttt
gagaaggcccgagacgtgtatgaggaggcgatccagacggtgatgactgtacgagacttc
acacaggtctttgatagctatgcccagtttgaggagagcatgattgcggccaagatggag
acaacttcagagctagggcgggaggaagaagatgacgtggacctggagctgcgtctggcc
cgctttgagcagcttatcagccgccggcccctcctcctcaacagcgtcctgctacgccag
aacccccatcacgtccacgagtggcacaagcgcgtggccttgcatcagggccggcctaga
gaggtcatcaacacgtacacggaggctgtgcagaccgtggatcccttcaaggccacaggc
aaaccccacacgttgtgggtcgcctttgccaagttctacgaggataacgggcagctggac
gatgcccgcaccatcctggagaaggcgaccaaagtgaacttcaagcaggtcgaggatttg
gccagcgtgtggtgtgagtacggtgagatggagctgaggcacgacaactatgaccaggct
ctgcggctgctgcggaaggcaactgccctgcctgcccgccgggccgagtactttgatgga
tctgagcctgtgcagaatcgggtatacaagtctttgaaggtgtggtctatgctggctgac
cttgaggaaagtctgggcaccttccagtccaccaaggccgtgtacgagcggatcttggac
ctacgcatcgccaccccccagattgtcatcaattatgccatgttcctggaggagcacagc
tactttgaggagagcttcaaggcctacgagcggggcatctcactgtttaagtggcccaat
gtgtcagacatctggagcacatacctgaccaagtttattgctcgttatggaggccgcaag
ctggagcgggcccgggacctgttcgagcaggcactggatggctgtccccccaaatatgcc
aaaactctctacctgttatatgcccggctggaggaagagtgggggctggcccgccatgcc
atggctgtgtatgagcgtgccacccgtgccgtggagccctcccagcaacatgaaatgttc
aacatctacatcaaacgcgccgccgagatctatggcgtcacccacacccgcagcatctac
cagaaagccattgaggtgctgtcggatgagcatgcacgagaaatgtgtcttcgttttgct
gacatggaatgtaaactgggggagattgaccgggcccgagctatctatagcttctgctcc
cagatctgcgatcctcggacgacaggaacgttctggcagacgtggaaggactttgagatc
cgccacgggaatgaagacaccatccgtgagatgcttcggatccggcgcagcgtgcaggcc
acgtacaacacacaagtcaacttcatggcctcccagatgctgaaggtgtacagcaatgcc
accggcaccgtgtctgaccttgcccctggacagagcgggatggatgacatgaaactgctg
gagcatcgcgcagaacagctggcggcagaggcagaacgggaccagccctcgaagggcaag
atcctctttgtcaggagcgacgcctcccgcaccgagctggccgaactggcccagcgggcc
aaccctgaggagattgagattggggaggaggaggacgaggaggaagaagaggggctacag
cccaatgaggtgccgctggagcagcagagcgtgccagccaccgtctttgggagcctgaga
gacgactga
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