KEGG   Phascolarctos cinereus (koala): 110206202
Entry
110206202         CDS       T05867                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pcw  Phascolarctos cinereus (koala)
Pathway
pcw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110206202 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcw03041]
    110206202 (SNRNP40)
Spliceosome [BR:pcw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110206202 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    110206202 (SNRNP40)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WD40_like WDR54 PROPPIN
Other DBs
NCBI-GeneID: 110206202
NCBI-ProteinID: XP_020839037
UniProt: A0A6P5K224
LinkDB
Position
Unknown
AA seq 361 aa
MIEQHKRKGPELPLVPLKRPRHELLLGAAGPGAGAGPAAGQQPPPGALLQAGPPRCSSLQ
APIMLLSGHEGEVYCSKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH
YNTDGSMLFSASTDKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV
KLWDIRKKAAVQTFQNTYQVLTVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD
SVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD
GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPDEPIILSASSDKRLYMGEI
Q
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgatcgagcaacacaagcggaagggtccggagctgccgctggttcccctcaagcggccc
cgtcatgaactgctgttgggagcggcgggaccgggggccggggccgggcctgccgcgggg
cagcagccgccgccgggggccctgctacaagcgggtcctcccagatgttcttcccttcag
gctcccatcatgctgctgtcaggacatgaaggggaagtgtactgtagcaagttccacccc
aatggatccaccttagcatctgcaggatttgaccggctcatcttgttgtggaatgtatat
ggggattgtgataactatgccaccctgaaaggacacagtggggcagtcatggagttgcat
tataacacagacgggagcatgctcttctcagcttccacagataagactgttgctgtgtgg
gatagtgagactggagagagaattaagaggctgaaggggcatacttcctttgtgaactcc
tgttaccctgccaggaggggtccccagctagtctgcactggcagtgatgatggcacagtg
aagctttgggatatccggaaaaaagcagctgtccagacatttcagaatacctaccaggta
ttgactgtgaccttcaatgacaccagtgatcagattatctccggtggcattgacaacgac
atcaaggtctgggacttgcgccagaacaagttgacatacaccatgaggggccatgccgat
tctgtgaccggcttgagtctgagttctgaagggtcttacctgctctccaacgcaatggac
aacacagttcggatctgggatgtccggccttttgccccaaaagagaggtgtgtgaagata
tttcagggaaatgtacataactttgagaagaatctcctgaggtgttcctggtcacctgat
ggaagcaaaattgcagctggttcagccgacaggtttgtatacgtgtgggatactacaagc
aggaggatcctttacaagctgcctggccatgctggctcagtcaatgaagtggccttccac
ccagatgagcccatcattctgtctgcatccagtgacaaaagactttatatgggggagatc
cagtga

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