Phascolarctos cinereus (koala): 110209088
Help
Entry
110209088 CDS
T05867
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110209088 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcw03032
]
110209088 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pcw03400
]
110209088 (TOPBP1)
DNA replication proteins [BR:
pcw03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
110209088 (TOPBP1)
DNA repair and recombination proteins [BR:
pcw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110209088 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
110209088
NCBI-ProteinID:
XP_020842956
UniProt:
A0A6P5KEG0
LinkDB
All DBs
Position
Unknown
AA seq
1513 aa
AA seq
DB search
MSGSDREPYYVKFVKAQGNSEFFFTALESMKEFQSEKYLQTITEEEALNIKKNDRSLYIC
DPFSGIVFEHLKKLGCRIVGPQVVTFCMQHQRCVPKAEYPVYNMIMADITISCTSLDKET
RKEVHKYVQMMGGRVCRDLSISVTHLIAGEVGSKKYLVAANLGKPIMLPSWVKELWKQSQ
EKCMTQLTDINMEDFKCPLFFGCTICVTGLCSLDRRAVQRLTVENGGRYMGQLKMNECTH
LIVHEPKGQKYECAKRWNVHCVTVQWFFHSIEKGFCQDEAKYKTEPRSEAKSVLGTSTPT
GQNSEASGRTLSDVSHISNINSSCINESTHNSVMNNKLGSLLENLQNLDISAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINCGGGVRFNQLNEDVTHVIVGDYDDELKQFWTKSTHRP
RVVGPKWLLECFSKGYLLSEEPYIHLNYQPMEITVSDQPGMKSTFSKRKNSFSKKEFVNT
EKHRQADEDLLSQYMNDHMIDEGEKSETGVFNDSTHSTVQGDNLSFLSHNSLPETSTIIE
GLFSRKKFLVVGFSEEDESCVVNVIKENAGKILPLQSRTIADYAVVPLLGCEVESTVGEV
VTNTWLITCVEKQNLFDPESNPLFTPVPVLEGSGNPLENCVLSFSQFVGAEKDSLVYLAS
LLGARVQEFFVRKDSEKNDMFASTHLVVKQPDGSKYHAAEKWGLPAVSMAWILETAKLGK
RADECKFMVGNLRRQDESFETQMTVDKTYSDTSENSSTVLEPERRAAVTPLDVNRFRSKT
FHTVISQHTRKSSGPPIEVQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPL
GPSQRCRRMSTPLSEVIGKNLKLALANSTRHTVALNASPVLKDTQAEKEEDPKPLHHVVL
CVSKKLSKKQSELNTIAASLGGGYRWSFDETVTHFIYQGRQNDTNREYKAVKERGIHIVS
EHWLLESAQEYRRLPESLYPHTYNPKMSLDISAVPDSRFCTSRSPSTSKMAKDDDEPLLH
LSLEGNNEDMTIDQKEVASTNGEIPNIPKGALTQTLEMRKSFQKQLQEIMSATSVVKLQG
QRNSLSRSGCDSSSSTPDNAWSARSGRSRVLEALRQSRQALADINTEPSQSEQIIWDDPT
AREERARLASNLQWPICPTQYSELQTNVKNLEDSPFQESLHDSAIAEHAVCDPRRVCVTE
VPKQPICEDLESTMKDSHLIPTPQAPSIAFPLANPPVAPHPKEKTVQAEETHEELEKQYR
FQLSSLNPQERIDYCHLIEELGGLVLEKQCFDPSCTHIIVGHPLRNEKYLASMAAGKWIL
HRSYLEACRAAGRFVQEEEYEWGSSSILDVLTGINVQQRKLALAAMRWRKRIQKKQEEGI
VEGAFSGWKVILNVDQSREAGFRRLLQSGGAKVLPGHSVSLFKEATHLFADFSKLKPDDT
RVNIPEAAAQKVNCLKPEYIADYLMQESPPSLENYSLPEAVSFLQNNKETGTGLSQKRKT
PTEINKFKRPRIH
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaagtgaccgggagccgtattacgtgaagttcgtgaaggcgcagggcaactcg
gagtttttctttacagcgcttgagtctatgaaagaattccagtcagaaaaatatcttcaa
actattacagaagaagaggcattgaatattaaaaaaaatgacagatcactttatatctgt
gacccttttagtggcattgtttttgaacatctcaaaaagcttggctgtagaattgttggc
ccacaagtagtcacattttgtatgcagcaccaacgatgtgtcccaaaagcagagtatcca
gtttataatatgattatggcagacataactatttcttgcacaagccttgacaaagaaaca
aggaaagaagttcataaatatgtacaaatgatgggtggacgagtttgcagagacttgagt
atatcagtaactcaccttattgctggagaagtcggcagcaaaaaatatttagtggctgca
aatctagggaaacctattatgcttccttcttgggtaaaagagctatggaagcagtcacaa
gagaaatgtatgacacagttaacagatataaatatggaagatttcaaatgccctttattt
tttggctgtactatttgtgtgactggtttatgtagcttggatagaagggcagttcagcga
ctcactgttgagaacggaggtcgatatatgggacaactgaaaatgaatgaatgcacacac
ctcattgttcatgaaccaaaaggtcagaaatatgaatgtgccaagagatggaatgtacac
tgtgtgacagtccagtggttttttcacagtattgagaaaggcttctgtcaagatgaagcc
aagtacaagacagagcctagatcagaagcaaagagtgtactgggcacttctactcctact
ggccagaacagtgaagctagtggtcgtactctttcagatgtcagtcacatatctaacatc
aattcaagttgcattaatgagtctacacataactcagttatgaacaacaaattggggtct
ctacttgaaaatctacaaaacttggatatcagcgcatttcaagcacctgaggatttactg
gatggctgtcggatatacctctgtggttttagtggcagaaaattagataaactgagaagg
cttattaattgtggtggtggagttcgctttaatcagcttaatgaagatgtgacccatgtt
attgttggagattatgatgatgagttaaaacaattttggacaaaatcgacacacaggcct
cgtgtagtgggaccaaaatggctgctggagtgttttagtaaaggttatctgctttctgag
gagccgtacatccacttgaattaccagccaatggagataactgtttcagatcaaccaggc
atgaaatcaacattttccaaaagaaagaacagtttttctaagaaagaatttgtgaacaca
gagaaacatcggcaagctgatgaagacttgctttcccaatatatgaatgatcatatgata
gatgaaggtgagaagtcggaaactggggtctttaatgattccactcattctactgtacaa
ggggataacctgtctttcctcagccacaattcactgcctgagacttctacaattattgaa
ggtttgtttagccggaagaagttccttgttgtgggttttagtgaagaagatgaatcttgc
gttgtcaacgttattaaagaaaatgctggaaaaattctgcccctccaaagcagaactatt
gctgactatgctgtggttcctttactggggtgtgaagtggagtcaactgtaggagaagtt
gttacaaatacatggctgattacttgtgttgaaaaacaaaatctttttgacccggaatca
aatccactcttcacaccagtaccagtattggaaggaagtggtaatcctttagaaaattgt
gttctttcattcagccagtttgttggagcagagaaagattccttggtatacttagcaagc
ctgcttggagcaagagttcaagaattctttgtgcgcaaggacagtgaaaagaatgacatg
tttgccagtactcatcttgtagtgaaacaaccagatggttctaaatatcacgctgcagaa
aagtggggattacctgcagtgtctatggcttggatattggagactgctaagttgggaaag
agagcagatgaatgcaagttcatggttggaaatctacgcagacaagatgaaagttttgaa
actcagatgacagtagacaagacttattcagatacttcagagaattctagtacagtcctg
gaacccgaaagaagagcagctgttacacctttagatgtaaacagattccggagtaaaact
tttcatactgtgatctcacaacacactagaaagtcctcgggtccccctattgaagtacag
ccacttcagaaagagccttcactgcaccttgacacgccatctaaatttctgtccaaagac
aaactcttcaaaccttcttttgatgtaaaggatgcactggcagccttggaaactccatta
ggtcccagtcagcgatgcagaagaatgagtacccccctttctgaagttattggcaagaac
ttgaaacttgctttggcaaatagcactcgccacacagtagctcttaatgccagccctgtg
ctgaaggatacccaagcagagaaggaggaagaccccaaaccacttcaccacgtagttcta
tgtgttagtaaaaaactcagtaagaaacagagtgaactaaatactattgcagcatccctc
gggggcggatatagatggagttttgatgaaactgtgactcatttcatctatcaagggcga
caaaatgacactaatcgagaatataaggctgttaaagaaagaggaattcacattgtttca
gagcactggcttttagaaagtgcccaagaatacaggcgtcttcctgaatctctttatcca
catacttacaatccaaaaatgagcctggatataagtgcagtgccagacagcagattttgt
accagtcggtcaccatcaactagtaaaatggcaaaagatgatgatgagcctcttctccat
ttatctttggaaggaaacaatgaagatatgaccattgatcagaaggaagtggcaagtaca
aatggagaaataccaaatattcccaaaggagctctaacacagaccctggaaatgaggaag
agcttccaaaagcagctgcaggaaataatgtctgccacatcagtagtaaaactccaagga
caaaggaattccctttccagaagtggttgcgacagctcttcttcaactcctgacaacgct
tggtctgcacgcagtggccgcagtcgagtcctggaagcattacggcagtctcgtcaagct
cttgctgatatcaacacagagccctcccagagtgaacagatcatttgggatgaccctaca
gcacgggaggagagagcgaggctggccagcaacctacagtggcccatctgtcctacacaa
tattctgagcttcaaactaacgtaaagaatttggaagactcgcccttccaggaatctttg
catgattctgcaattgctgaacatgctgtctgtgatcctagacgtgtgtgtgtaactgag
gtaccaaaacagcccatttgtgaagacctggaaagtacgatgaaagacagtcatctcatc
cctacgccacaagcccctagcattgctttccccctagccaacccacctgttgctcctcac
cccaaagaaaagacagtacaggcagaggagacacatgaagaattagaaaaacagtaccga
tttcaactatcttctcttaatcctcaggagcgaattgattattgtcatctaattgaggaa
ttaggtggccttgtgctagagaaacagtgctttgatccaagctgtacacacatcattgtg
ggacatcctcttcggaatgagaagtatttggcttcaatggctgctggaaagtggatactt
catcgctcctaccttgaggcttgcagagcagctggacgctttgtccaggaagaagaatat
gaatggggaagtagttccatccttgatgttttgactggaatcaatgtacagcagaggaaa
ctagcacttgctgcaatgagatggaggaaaaggattcagaaaaaacaagaggagggcatt
gttgagggggcttttagtgggtggaaggtgattttgaatgtcgatcagtccagagaagca
ggatttcgacgtcttcttcagtctggaggagcaaaggtgctgcctggtcattctgtgtct
ctgttcaaagaagccacacacctttttgctgacttcagtaagctgaaaccagacgacacc
agagttaacataccagaagctgctgcccagaaagtgaactgcttgaagccagaatacatt
gcagattacctgatgcaggaatctcctccatcgttagagaattattctctacctgaagca
gtctcatttctccaaaataataaggaaactgggacaggattatcacagaagagaaaaact
cctacagaaataaataaattcaagcgaccgagaatacactaa
DBGET
integrated database retrieval system
