Phascolarctos cinereus (koala): 110212213
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Entry
110212213 CDS
T05867
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw05016
Huntington disease
pcw05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
110212213 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
110212213 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110212213 (HTT)
04131 Membrane trafficking [BR:
pcw04131
]
110212213 (HTT)
03029 Mitochondrial biogenesis [BR:
pcw03029
]
110212213 (HTT)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110212213 (HTT)
Membrane trafficking [BR:
pcw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
110212213 (HTT)
Mitochondrial biogenesis [BR:
pcw03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
110212213 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_ECM29
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
110212213
NCBI-ProteinID:
XP_020847810
UniProt:
A0A6P5KQB3
LinkDB
All DBs
Position
Unknown
AA seq
3081 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQPPPPPAQPPQPPQAQPPQQSPQQPPQQQPPPPPPPPPP
PQPGPSGVEEPAHRPKKELSTTKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFL
LCSDDAESDVRMVADECLNKVIKALMESNLPRLQLELYKEIKKNGASRSLRAALWRFAEL
AHLVRPQKCRPYLVNLLPCLTRISKRTEESVQETLAAAIPKIMASFGNFANDNEIKVLLK
AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYTWLLNVLLGLLVPVEEEHSTLFILG
VLLTLRYLIPLLQQQVKDMSLKGSFGVTRKETEVSPSTDQLIQVYELTLHYTQHQDHNVV
TGALELLQQLFKTPPAELLQALTTAGGIGQVSVTKEEFSSRSRSGSIVELIAGGGSSCSP
VLSRKQKGKVLLGEEEGLEDDPESRSEVSSSTFAASMKSEITGELASSSGVSTPVSTSSA
ADSTGHDIITEQPRSQHTLQSDSVDLTGCDLTSAATDGDEEDMLSRSSSQISAVPSDPTM
DMNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGAESQYSGMQIGQLQDEDDESS
NVLTDEVPDNFRNSTIALQQPHLLKNTGHSRQPSDSSVDRFLSKDETVEPGDHENKPSRI
KGDIGHFTDADLAPLVHCVRLLSASFLLTGEKGALVPDRDVRVSVKALAVSCVGAAVALH
PESFFSKLYKTPLETMEHQEDQYVSDILNYIDHGDPQIRGATAILCGTIIYSILNKSRFS
VENWLAVVRSSTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSCYSELG
LQLIIDVLTLRNSSYWLVRTELLDTLAEIDFRLVSFLEAKADHLHKGSHHYTGLLKLQDR
VLNNVVIYLLGDEDPRVRHVAASSLTRLVPKLFYNCDQGQTDPVVAVARDQSSVYLKLLM
HETQPPSHFSVSTITRIYRGYNLLPNITDVTMENNLSRVIAAVSHALTTSTTRALTCGCC
EALCLLSTAFPVCIWSLGWHCGVPLLSPSDESRKSCTVGMATTILTLLSSAWFPLDLSAH
QDAIILAGNLLAASAPKSLKSPWTTEDETNPGAMKQEEPWPALGDRMLVTMVEQLFCHLL
KAINICAHVLDDVTPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQTSVPLSPKKGNEA
SPASRSSDPSGPAITSKSSSLGSFYHLPSYLKLYDVLKATHANYKVTLDLQNSNEKFGGF
LRAALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFGTNLAS
QYDGLSSKPSKSQGKAQRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHD
TSGWFDVLQKVSTQLKTNLTSVTKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQR
QVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSY
ERYHSKQIIGMPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELET
QKEVAVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHID
SHEALGVLNTLFEILAPSSLRPVDMLLRSMFITPNTMASVSTVQLWISGILAILRVLISQ
STEDIVLSRIQELSFSPYLISCQIIKKLRDGGGSLPMPEDQSEVKQVKCLPEETFSRFLL
QLVGILLEDIVTKQLKVEMTEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTG
DGSDGSFYTLESLSELVRSMIPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTPKRHSLSS
AKLLSPQMSSDGEDSHLASTLGMCNREIVRRGALILFCDYVCQNLYDSEHLTWLIVNHIQ
DLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSSPTTLKKTLQCLEGIHLSQS
GAVLMLYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQNSMSQLPVEELNRIQEYLQK
SGLAQRHQRLYSLLDRFRRTVAPETASPSPVVTSHPLDGENHLSLEMINPDQDWYVSLVK
SQCCTKSDLALLEGAELVNRIPPGELAPFMMNKEFNLSLLAPCLSLGIREISGGQSSSLF
ETARSVTLDRVASLVQQLPTNHHVFQPLLPTENSAYWNQLNDLFGNAVIYQSITTLACAL
AQYLVLFSKLPTHLQLPPEKESDVLKFVVMALEALSWHLIHEQMPLSLDLQAVLDCCCLT
LHLPGLWSMLSSVEYVTHVCSLIHCVRFILEAVAVQPGDQLLSPERRKNTPRGVSEDEVD
SDVQVPKYITTACEMIAEMVASLQTVLALGHKRNSGIPAFLTPVLKNIIISLARLPLVNS
YTRVPPLVWKLGWSPKPGGDFGTTLPEIPVEFLQEKEIFKEFICRINTLGWTSRTQFEET
WATLLGVLVTQPIVMDQEESQQEEDTERTQINVLAVQAITSLVLSAMTLPVAGNPAVSCL
EQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIPTHHLYQAWDPVPSLSPAM
SGTLISHEKLLLQINTEREMGNMSYNLGQVSIHSVWLGNNITPLREEEWDEDEEDEGDLP
APSSPPTSPINSRKHRAGVDIHSCSQFLLELYSQWILPSSSAKRTPVILISEVVRSLLAV
SDLFTERNQFEMMYLTLTELRRVHPSEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLL
ETTLRSTHLPSKIGALHGILYVLECDLLDETAKQLIPVISDYLLSNLRGLAHCVNLHSQQ
HVLVTCAAAFYLMENYPLDVGPEFSAAVIQMCGVMLSASEESTPAIIYHCVLRGLERLLL
SEQLSRLDGESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPNPTAPD
SESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQP
YPQFMATVVYKVFQTLHATGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSQ
WGFSSPSTHHQQDGEVGTSGH
NT seq
9246 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctggagaagctgatgaaggcattcgagtccctcaagtccttccagcagcag
cagcagcctccgccgccgccagcgcagcctccgcagccgccccaggcgcagccgccccag
cagtcgccgcagcagccgccccagcagcagccgccgccgccgccgccgccgccgccgccg
ccgcagcccgggccgtccggggtggaggagccggcgcaccgaccaaagaaagaactttca
actactaagaaagaccgggttaatcattgcctgacaatatgtgaaaacatagtggctcag
tctctcagaaattctccagaatttcagaaacttttaggcattgcaatggaactctttctt
ctgtgcagtgatgatgcagaatcggatgtcagaatggtagctgatgaatgtctcaataaa
gttataaaagctttgatggaatccaatcttcccaggttacagttagagctttataaggaa
ataaaaaagaatggtgcttctcgaagtctgagagctgctctttggaggtttgctgaactt
gcccatctggttcgacctcagaaatgcagaccatatttggtaaaccttttgccttgtctg
actcgaataagcaagcgaacagaagaatctgtacaagagactttggcagctgctataccc
aaaattatggcatcttttggcaactttgcaaatgacaatgaaattaaggttttgttaaaa
gctttcatagctaatctcaagtcaagttctcctacaatacggcgaacagcagctggatca
gcagtgagcatctgccagcattcaagaaggacacagtatttttatacctggttacttaat
gtacttttaggcttactagttcctgttgaggaggagcattctactctttttattcttgga
gtattgctcacattgaggtatttaatccccttgctccaacagcaagtcaaggacatgagt
ttgaaagggagctttggtgtcacacgaaaagaaactgaagtctcaccttctacagaccag
ctcatccaggtatatgaattgactttgcattacacccagcaccaagaccacaatgtcgta
actggagcattagaactattacaacaacttttcaaaacacctccagctgagcttcttcaa
gccctgacaactgcgggtggtattggacaggtcagtgtgaccaaagaggagtttagtagc
agaagtcgcagtgggagcattgtggaacttatagctggaggggggtcttcatgcagccca
gttctttcaagaaaacaaaaaggtaaagtgctcttaggagaagaagaaggcttagaagat
gacccagaatcaaggtctgaagttagcagctcaacatttgcagcctcgatgaagagtgaa
atcacaggtgaattggcttcttcatcaggtgtatcaactcctgtttccactagttcagct
gctgattccacaggtcacgatatcatcactgagcagcccaggtcacaacatactttacag
tcagactctgttgatctgactggctgtgacttgacaagtgcagccacagatggagatgaa
gaggatatgcttagtcgcagctcaagccaaatcagtgctgtgccatctgaccctactatg
gacatgaatgatgggacccaggcttcatcaccaattagtgatagttcacagacaactaca
gaaggtccggattcagctgtgaccccttcagacagttctgaaattgtattagatggtgct
gaaagccagtattcaggaatgcagattggacaattacaggatgaagatgatgagtcatca
aatgttctcacagatgaggttccagacaatttcagaaactctactattgcacttcagcag
ccccatctcctgaaaaacacgggacatagcagacagccatctgacagcagtgttgacaga
tttttatcaaaagatgaaactgtggagccaggtgatcatgaaaacaagccttctagaata
aaaggagatattgggcacttcactgatgctgatttggcaccgctagtccactgtgttcgg
ttgttatctgcttcctttttgcttacaggagaaaaaggtgcattggttccagatagggat
gtgagggtaagtgtgaaggctttggcagtaagttgtgttggagcagctgtggcccttcat
cctgaatctttctttagcaaactttacaaaacacctcttgagaccatggaacaccaagag
gatcagtatgtctcagatatcttgaactatattgatcatggagacccacagattcgagga
gccactgctatcctttgtgggaccattatctactccattcttaataaatctcgcttcagt
gtggaaaactggttagcagttgtcagaagttcaacaggcaataccttttccctggtagac
tgcatccctttattgcagaaaactttgaaagatgagtcttctgttacctgcaagctggct
tgcactgctgtgaggcactgtgtcatgagtttgtgcagcagttgctatagtgaattagga
ttacagttgatcattgatgtcttaactctgagaaatagttcctactggttggtaaggaca
gaacttttggatactcttgcagaaattgactttaggttagtcagctttttggaggcaaaa
gcagaccatttacacaagggatctcatcattatactgggcttttaaaactgcaggatcga
gtgctcaataatgttgtcatctacttacttggagatgaggatccccgggtgaggcatgtt
gctgcatcttcattaacaaggcttgttccaaagctgttttataattgtgatcaaggacag
accgatccagttgtggcggtagcaagggaccaaagcagtgtctacctgaaacttctaatg
catgagactcagcctccctctcacttttcagtcagcactatcacaagaatatacagaggc
tacaacttactaccgaacataactgatgtgacaatggaaaataacctttctagagttatt
gcagcagtttcccatgcactgacaacatcaactacacgggcacttacatgtggctgttgt
gaagctttgtgtcttctttctactgcctttccagtctgcatttggagtctaggatggcat
tgtggggttcctctcctgagtccatcagatgagtctaggaagagctgtacagttggaatg
gctacaacaattctcacccttttgtcctcagcctggttccccctggatctgtcagcacat
caagatgcaataattttagctgggaatttgcttgcagctagtgcccccaaatctctgaaa
agcccatggacaacggaagatgaaaccaatcctggagccatgaaacaagaagagccgtgg
ccagctttgggagaccgaatgttggttacaatggtggaacagctcttttgtcatttgctg
aaagccattaacatctgtgctcatgtgttggatgatgttactcctgggccagcaataaag
gcagccttaccctctctgaccaacccaccttctctaagtccaatccgtcgtaaaggaaaa
gaaaaagaaccaggagagcagacctctgtaccactgagtcccaaaaaaggcaatgaagct
agtccagcttctaggtcttctgatccctctggacctgctataacaagtaaatcatcatca
ttgggaagtttctatcatcttccttcttatctcaagttgtatgatgttctaaaagctact
catgctaactataaggttacattggatcttcagaatagcaatgaaaagtttggggggttt
cttcgggctgccttggatgtcctttcacagattcttgaactagcaaccctgcaggatatt
ggcaagtgtgttgaagaaatcttgggatacctgaaatcctgtttcaatagagaacccaca
atggctactgtttgtgttcagcagttgttgaagactctgtttgggacaaatctggcatca
cagtatgatggcttatcttccaaacccagcaaatctcaaggaaaagcgcagcgtttgggt
tcttctagcttgcgtcctggcctttatcattactgcttcatggcaccatatacgcacttt
acacaggccttggctgatgctagtttgaggaatatggtccaggcagagcaagaacatgac
acttctgggtggtttgatgtgctccaaaaagtgtctacacagttgaaaaccaaccttaca
agtgtgacaaagcaccgtgcagacaagaatgctattcacaatcatattcgtttatttgag
cctcttgtcatcaaggctttaaaacaatacaccacaacaacatctgtgcaattgcagaga
caggttctagacttactggcacaactggttcagttacgagttaactactgtcttctggat
tctgatcaggtgtttattggatttgtcttaaagcagtttgaatacattgaagtgggccag
tttagggaatcagaggcaattattccgaacatctttttcttcttagtattgttgtcttat
gagcgctatcactcgaagcagatcattggaatgcctaagatcattcaactctgtgatggc
atcatggccagtgggaggaaagctgtaacacacgccataccagctctgcagcccatagtt
catgatctctttgtgttaagaggaacaaacaaagcagatgctggaaaagagctggagacc
caaaaagaggtggctgtgtccatgttattaagacttattcagtaccatcaggtattagag
atgttcatcctagtcctccagcagtgtcacaaggagaatgaagacaagtggaagagatta
tctcgacaaatagctgacatcattctcccaatgttagcaaaacaacagatgcatattgat
tctcatgaagctcttggagtattgaacactttatttgaaatattggctccttcatccctc
cgtcctgtagacatgcttttacgaagtatgttcattactcccaatacaatggcatcagtg
agcactgttcagttgtggatatcaggcatcctagctattctgagagtacttatatcccag
tcaactgaagacattgttctttctcggatccaggaactctctttctctccttatctaatc
tcatgtcaaataattaaaaaattaagagatggaggtggtagcttgccaatgccagaagat
caaagtgaagtgaaacaagtcaagtgtttgccagaagaaacattttccagattcctctta
cagctggtgggcattcttctagaggacattgttacaaagcagctgaaagtggagatgact
gagcagcagcacacattctattgccaagaactgggcacactgctgatgtgcctgatacac
atcttcaagtcaggaatgttcaggagaatcactgcagctgccactagactctttacaggt
gatggctctgatggcagcttttataccctggaaagcctgagtgaattggtacgctctatg
attccgacacatccttctttagtgctcctgtggtgtcagattctactgcttgtcaactat
accaactacaactggtggtccgaagtgcatcagacaccaaaaaggcacagtctttccagt
gcaaagctactcagccctcagatgtctagcgatggtgaggattcccacctggcatccaca
cttggcatgtgcaatagagagatagtacgaagaggcgcactcattcttttctgtgattat
gtttgtcagaacctatatgattcagaacatttaacctggcttattgtgaatcatattcaa
gatttgatcagtctgtcccatgagcctccagtacaagactttattagtgcagtccacagg
aattcagctgctagtgggcttttcatccaggcaattcagtctcgctgtgaaaatctttca
tctccaacaaccctgaagaagacactacagtgcttggaggggatccacctcagccagtcg
ggtgctgtgctcatgttgtatgtggacaagcttttgtgtacgccattccgtgtgctggct
cgcatggttgacacgcttgcttgtcgtcgagtagaaatgcttttggctgccaacttacag
aacagcatgtcacagttacctgtggaagaactgaatagaattcaggaataccttcaaaaa
agtggattagctcagagacaccaaagactctattccctgctggacaggtttcgtcgtaca
gtagcgccagagacagctagcccttctcctgtagtcacttcacaccccctggatggggaa
aatcacttgtcactagagatgataaatccagaccaagactggtacgtgtctctagtcaaa
tctcagtgttgcactaagtcagacttggcactgctggaaggtgcagagctggtaaatagg
attcctcccggtgaactggcccccttcatgatgaataaggagttcaacttatccctccta
gctccttgcttaagtcttggcatccgtgaaatctccggtggtcagagtagcagcctattt
gagacggcccggtcagtgaccctggaccgtgtggccagcctggtgcagcagcttccaacc
aaccatcatgtttttcagccccttttgcccactgagaattcagcctactggaatcagcta
aacgacctctttggaaatgctgtgatttatcagtcaattactaccctggcctgtgccctt
gctcagtacttagtactattttctaagttaccaactcatcttcaacttcctcctgaaaaa
gaaagtgatgttctgaaatttgtcgtgatggcacttgaggccctgtcatggcatttaata
catgaacagatgccattaagtttggatctgcaggctgtcctggattgctgctgtctaact
ttgcatcttcctggtctttggagtatgttgtcttcagtggagtatgtcacccacgtgtgc
tccctaattcactgtgttcgatttattctagaagcagttgcagttcaacctggggaccaa
cttcttagcccagaaagaaggaagaatactccaagaggagtcagtgaagatgaagttgat
tcagatgtgcaggttcccaagtacattaccactgcttgtgaaatgatcgcagaaatggtg
gcatcattacagactgtgttggctttgggtcacaagaggaacagtggaattccagctttc
cttactcctgtactgaaaaacatcatcatcagccttgctagactgccactagtcaacagc
tatactagagtgcctcccttggtgtggaaactaggatggtcacctaaacctggaggggat
tttggcacaacgcttcctgaaatccctgtagaatttcttcaagagaaggagatctttaaa
gaattcatctgtcgtattaataccttgggatggacaagtcgtactcagtttgaagaaacc
tgggctaccctccttggtgtccttgtaactcagcctattgtgatggatcaagaagaaagt
cagcaggaagaagataccgagaggacccagatcaacgttcttgcagtacaagccatcacg
tccttggtgctaagtgcaatgacccttcctgtcgcaggcaatccagcagtgagctgcttg
gagcaacaaccccggaacaaagcccttaaagctctggatacaaggtttgggaggaaactg
agtgtcatcaggggaattgttgagcaagaaattcaagcgatggtttcaaagagagacaac
attcccacacatcacttgtaccaggcttgggatcctgtcccatctctgtctccagctatg
tcaggtactcttatcagccatgaaaaacttctgctacagatcaacactgaacgagaaatg
gggaacatgagttataatctaggacaggtctctatacactctgtgtggctgggaaataac
atcaccccattgagagaagaagaatgggatgaagatgaagaagatgagggtgaccttcct
gccccttcttcacccccaacatctccaataaactccagaaaacaccgggctggagttgat
atacattcttgttcgcagtttttgcttgaattgtacagtcagtggatactcccatcaagt
tcagccaaaagaactccagtcattctgatcagtgaagtggtgagatctctcctggctgtc
tcagacttgtttacggagaggaatcaatttgagatgatgtacttgacactgactgagctt
cgaagggtgcatccttctgaagatgaaattctccttcagtacttagtaccagccacttgt
aaagcagctgccgttctgggcatggataaagctgtggccgagccagtgagcaggctgttg
gagaccacactccgaagcacccatttgccaagcaagattggagcactgcacggcatcctc
tatgtgctcgagtgcgacttacttgatgaaacagcaaagcagctcattccagttatcagt
gattacctcctttctaatctcagaggactagctcattgtgtgaatctgcacagccagcag
catgtcctggtgacctgtgctgctgccttctaccttatggagaattatcccctggatgta
ggcccagaattttctgctgcagtaatacagatgtgtggggtgatgctctctgccagtgaa
gaatccactccggccattatttatcattgtgtcctgagaggtttagaacgacttcttctt
tcagagcaactctccaggctggatggagagtccttagttaagctcagcgttgaccgagtg
aatgtgcacagtcctcacagagccatggcagccctgggcttgatgttaacttgcatgtat
acaggaaaggagaaaatcagccctggcagaacctcagatcccaaccctactgccccggac
agtgagtcggttattgttgcaatggagcgggtatctgttctctttgataggatcaggaaa
ggatttccctgtgaagccagagtggtggcacggatccttcctcagtttctagatgatttt
ttccctcctcaggatgtaatgaacaaagtaattggagaatttctatcaaaccagcagccg
tatccacaattcatggcaactgttgtatataaggtgtttcagacgttgcacgccacagga
caatcatctatggtccgagattgggtgatgctctctctctcaaacttcactcagaggacc
ccagtcgcaatggctatgtggagtctctcctgttttttcgtcagtgcatccactagtcag
tggggtttcagcagtccttccacacatcatcagcaggatggggaagtcggaacaagtgga
cattaa
DBGET
integrated database retrieval system
