Phascolarctos cinereus (koala): 110213469
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Entry
110213469 CDS
T05867
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110213469 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcw03021
]
110213469 (PCF11)
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110213469 (PCF11)
Transcription machinery [BR:
pcw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110213469 (PCF11)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110213469 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
110213469
NCBI-ProteinID:
XP_020849485
UniProt:
A0A6P5KUF3
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MSEPAPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVV
SSPGISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSV
QQGVSNIVPGSAPSKLLVSQIPPMAVKTSHQVSVQPEKSRPSSSSSSQLQDMKVTNRDPR
LNRISQHSSHSKEQSHRKDFLVNTMNQSDIKANKSIPTDKQNSSKQEKSKSGEKITKKEL
DQLDTKSKSKSPSPLKNKFSHTKDTKNQESESGRGVPEMSKRDPRLKKHLQDKPDGKDDD
SKEKRKSSEKKDKEEHVKSSEHRLTGGRNKIINGIVQKQDSGTEESEKQGTKTGRSSTRK
RSRSRSPKSRSPITHSPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGVKQSHVEEFTQA
SRDERNSNKRSAKQDTRDPRRVKKTQEERPQETVNQHSTKSGSEPKENVENWQSSKSTKR
WKSGWEENKSLQQGEEHQGLGKSPHLRHRESWGSAKGILSSRTPKQQHRLSVDANLQIPK
ELTSASKRELLKKANDSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCNVWDSPTEENKG
GLKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSK
SKHGGRSSGAQFDRKEQFSERSRRLSPISGSRTYAENLSPHDGRRRHEEQVSAKGVREEQ
RSPFSERFALKRPRYEDSDKTFADSPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVAR
GDGPTKMIFEGPNKPNPRIDGPPTPASLRFEGSPAQIGGGGPMRFEGPQGQLGGGCPLRF
EGPQGPGGTPLRFEGPLGQPGGGGLRFEGAAGLRFEGPGSLRFEGPAGQSVGGLRYEGPR
GQPVGSLRFEGPHGQPVGALRFENPRGQPVGGLRFEGSHGASGSGIRFEGPHSQPGAGVR
FEGPLLQQGGGMRFEGPHGQPMAGLRFEGQHNQISGSLRFEGPHGQPGVGVRFEGPLVQQ
GSGMRFEGPSVQGGSMRFEGPLGQGGPRFEGCHASRFDGQPSLLPRFDGLHSQPGPRFER
TPGQQGPQRFDGPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQSARFDNHPSQRLD
AVSFSQTGPYNDPPNSAFNAPSQGIQFQRHEQMFDTPQGPNFNGPHGPGAQSFSNPLNRT
SGHYFDEKNLQGPQFGNFSNLPTPIAVGNIQPSQQVLSGVTQPVAFGQGQQFLPVHPQNP
GTFVQNPAGALPRAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVSEVATQPPPE
EEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLD
WHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEA
AKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQ
NTSSFDCTPSPSKTPVENPLNIMLNIVKKELQEPCDSSKVKEEPVDVPPACTDDSIATPT
EIKTEPDTVESV
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggcaccggccgaggccggtaccgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtccctggaagacctgaccttcaacagtaaaccgcacatcaatatgctg
accattctggctgaggagaacctgcctttcgccaaggagatcgtctccctcatcgaggcc
caaaccgccaaggctccttctacagagaagctccctgttatgtatcttatggattccatt
gtgaagaacgttggaagagagtatcttactgcctttactaaaaacctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgacattttccctttgaagaaactctatgccttggatgtcagagttaattct
ttagatcctgcttggccaattaagcctctaccccccaatgtgaatacttctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagcctcctacacctagcacagtggtc
agttcccctggaatctccactcctccaattgtccctgatatccaaaagaatttgacccaa
gagcaactgataaggcaacagctgctggcaaaacaaaaacagttgttagaacttcagcag
aaaaaattagaactggagctggaacaaactaaggcacaactggcagtttctcttagtgtt
cagcaaggggtatctaacatagttcctggatcagcaccttccaaattacttgtttcacaa
attccacctatggcagttaaaacttctcatcaggtttctgtacagcctgaaaagagtcgt
ccatcttcttcctcatcttcacagctccaggatatgaaagtaacaaacagagatcctcgt
cttaatcggattagccaacattcttctcatagtaaagagcaaagtcacaggaaagacttt
ctagtaaatacaatgaatcaatctgatatcaaggcaaataaatctatacctactgacaaa
caaaactcatcaaagcaagaaaaaagtaaatcaggtgaaaaaatcacaaaaaaagaactt
gaccagttagataccaaatccaaatctaaatctccttcacctttgaaaaacaaattttct
catacaaaagatacaaaaaatcaggaatccgaaagtggtcgaggggtccctgaaatgagc
aaaagagatccccgattaaaaaaacacctccaagataaacctgatggcaaagatgacgac
tcaaaagagaagagaaaatcttcagaaaaaaaagataaagaagagcatgtgaagtcatct
gaacatagactcactggaggtcgaaataaaattataaatggcattgtacaaaaacaagac
tctggtactgaagaatcagaaaaacaaggaacaaaaacaggaagatccagtactagaaaa
cggtctcgatcacgatctcctaagtctcggtcaccaatcacgcattctccaaaaaggaga
gataggcgctcacctaaacgaagacaaaggagcatttctccttctacttctacacctaaa
actggaaagctacgccagtcaggagttaagcagtcacatgtagaagaatttacacaagct
tctcgtgatgaaagaaattctaataagagaagtgctaagcaggacactcgagatcctaga
cgagtgaaaaagactcaagaagagagaccacaagaaactgtaaatcaacattctacaaaa
tcaggatctgaaccaaaggagaatgtagaaaattggcaaagctctaagtctacaaaaaga
tggaaatctggttgggaggaaaataaaagcttacaacagggtgaagagcatcaaggactt
ggtaaatcacctcatctaaggcatagagagagttggggcagtgctaaaggaattttatca
tcccggacccccaaacaacaacatcgattaagcgtagatgccaatcttcagattcctaag
gaattaacttctgcaagcaaaagagaattacttaaaaaggcaaatgacagtttaacatct
ggtgagattacacaggatgaattccttgttgttgttcatcagattcgtcagctcttccag
tatcaagaaggaaaacatagatgcaatgtgtgggatagtcctacagaagaaaataaaggt
ggattaaaaaagaaacctctcctgtctgatgctgaattaacatattatgagcataaagct
aaactcaaaaggacacaggttcagcattcatttccaagacttgatctcttagatcctgat
atttttgattaccatttgactgatgctttgttgtctggaatagaatgtgaaccatccaaa
agtaaacatggaggtaggagtagcggagcacagtttgacagaaaagaacaatttagtgaa
agatcaaggcgtctttctccaatatctggaagccgtacttatgcggagaatctttccccc
catgatggtcgaagaaggcatgaagagcaagtctccgctaaaggtgtccgagaggagcaa
aggtctccattcagtgaacgttttgcactcaagaggcctagatatgaagattcagataaa
acatttgcagatagcccagcatcgagatattcaagcctcgatacaacaaatcagagactt
acagcattagctgaagatagaccattatttgatggaccttctaggccatctgtagcaagg
ggagatggcccaactaaaatgatttttgaaggacctaataagccaaaccctagaattgat
ggacctccaacaccagcttctcttcggtttgaagggtcaccagcacaaatagggggaggg
ggacctatgaggtttgaaggaccacaaggtcagctaggaggtgggtgtcctttgagattt
gaaggtcctcagggaccaggaggtactcctttgagatttgaagggccacttggacagcca
ggaggaggtggcttaaggtttgaaggagcggctggtttgcggtttgagggtccaggtagt
ttgaggtttgagggcccagctggccagtccgtaggtggtcttaggtatgaaggtccccgt
ggtcaacctgtgggtagtcttaggtttgagggacctcatggtcagcctgtaggtgctcta
aggtttgagaatccccgaggtcagcctgtaggtggactcagatttgaggggagccatggt
gcatcaggaagtggaattagatttgagggaccccatagtcagccaggtgctggagtcaga
tttgaaggccctttgcttcagcagggtggtggtatgagatttgagggtccccatggccag
ccaatggcaggtctgagatttgaaggacaacataatcagattagtggaagccttcgattt
gaaggaccacatggtcagccgggggttggggtcagatttgaaggacccttagttcaacag
ggaagtggaatgagatttgagggtccttctgtacaaggaggtagtatgagatttgaagga
cctctaggccaaggtggtccaagatttgaggggtgtcatgcttcaagatttgatggtcag
ccatctctcttgccaagatttgatggcttgcatagtcagcccggtcctaggtttgaaaga
actcctggtcagcaaggcccacaaaggtttgatgggccacctggtcagcaagtacaacca
agatttgatacggggcctcaaagatttgatggtccacaacaccagcaagcatcgagattt
gatattcctcttggtcttcaaagtgcgaggtttgacaatcatccttcacagagacttgat
gcagtctcttttagtcagactggcccatataatgaccctcctaacagtgcatttaatgca
ccatcgcaaggaatacagttccaaagacatgagcaaatgtttgatacacctcagggacca
aattttaatggaccacatggccctggagcacaaagtttctcaaatccacttaacagaaca
tctggacattattttgatgaaaagaatcttcagggtcctcagtttggaaactttagcaat
ttgcccacgccaattgcagtagggaatattcagccatctcaacaagttctctctggtgtt
actcagcctgtagcttttggacaaggacaacagtttttaccagttcatccacaaaatcct
ggtacttttgttcagaatccagcaggtgctcttccaagagcatatcctgataatcatctc
agccaggttgatgtgaatgaactcttctctaaactgttaaaaacaggaatacttaaatta
tcccaacctgattcagcaacaactcaagtaagtgaagtcgctacacagcctccccctgag
gaagaagaagaagatcaaagtgaagatcaagatgttcctgatctcactaatttcacagtt
gaagaattgaaacagcgttatgatagtgttataaatcggctgtatactggtatccagtgt
tattcttgtggaatgaggtttacaacatcacagactgatgtctatgcagaccatttggac
tggcattaccgacaaaatagaactgaaaaggatgttagcagaaaagttactcatagaagg
tggtactacagtttgacagactggatagaatttgaagaaatagctgatttggaggaacgt
gcaaagagccagttctttgaaaaggtacatgaagaggttgtgttgaaaacccaagaagct
gctaaagaaaaagagtttcagagtgtccctgctggaccagctggggcagtagagagctgt
gaaatatgtcaggagcaatttgaacaatactgggatgaagaggaagaggaatggcatctt
aaaaatgctatccgagtagatggaaagatttaccatccatcatgttatgaagattatcag
aatacatcttcatttgattgtacaccatctcccagcaagacacctgttgaaaatcccttg
aatattatgttgaacattgtcaaaaaagaattgcaggaaccttgtgacagttccaaagtt
aaagaagaaccagttgatgtaccaccagcttgtacagatgacagcatagctacacctact
gaaattaaaacagaacctgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
