Phascolarctos cinereus (koala): 110219206
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Entry
110219206 CDS
T05867
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110219206 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcw03000
]
110219206 (CNOT4)
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110219206 (CNOT4)
04121 Ubiquitin system [BR:
pcw04121
]
110219206 (CNOT4)
Enzymes [BR:
pcw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110219206 (CNOT4)
Transcription factors [BR:
pcw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110219206 (CNOT4)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110219206 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110219206 (CNOT4)
Ubiquitin system [BR:
pcw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110219206 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
110219206
NCBI-ProteinID:
XP_020858017
UniProt:
A0A6P5LIN2
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
PGLSKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNE
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKEL
SVQDQPALSPTSLQNPSSHTTTAKGPGPGFLHPAASTNANSLSSTFSVLPQRFPQFQQHR
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSAPTSNTATTDSLNWDSP
GSWMDPAIITGIPASTGNNLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSNPFNTQ
IPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaagtcccgatgcaaaggaagaccctgtggaatgccccctttgcatggagccc
ttagagatcgatgatatcaactttttcccttgcacttgtggctaccaaatttgccgcttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaggacccagcagtatataaaccactctcccaagaagaactgcaaaggataaagaat
gagaaaaaacagaagcagaatgaaaggaaacagaagatatcagagaatcgcaaacacttg
gccagtgtacgagttgtacaaaagaatctcgtttttgtggtaggactctcccagcgtcta
gcagatccagaggttttaaagcggccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagcgccagtgcttac
gtcacctacattcggtcagaagatgctctcagagccatacagtgtgtcaacaatgtagta
gtagatggcagaacactcaaggcttctctaggtacaacaaaatactgcagttacttccta
aagaatatgcagtgtccaaaacctgactgcatgtatctacatgaattgggggatgaagca
gctagcttcacaaaagaggaaatgcaggcgggtaaacaccaagagtatgaacagaagcta
cttcaagaattatataaattaaaccccaattttcttcagctatctacgggttccgttgac
aagaataagaacaaagtgacaccactgcagagccccattgacaaaccttcagattccctc
agtatagggaatggtgacaattcccaacagatatctaacagtgatacgccatcaccacct
cctggtttatcaaagcctaatccagtcatccccatcagttcatctaatcacagtgcaagg
tccccttttgaaggggcagtaacagagtcacagtcactattctcggacaacttccggcac
cccaaccctattcctagcgggctacccccttttcccagctccccacagacttccaatgag
tggccaacagcaccagaaccacagagcctcttcacatcagaaacaatcccagtgtcatcc
tctacagactggcaagcagcatttggctttggttcctctaaacagcaagaggatgacttg
gggtttgacccctttgacatcactcgcaaagccttagcagacctgattgagaaggaactg
tcagtccaagatcaacctgccctttcgcccacatctcttcagaacccttcctcacacact
acaaccgccaaagggccaggccctggatttttgcatcctgccgcatccacaaatgccaac
tctctcagtagcaccttttcagtcttgccacagaggttccctcagtttcagcaacatcgg
gcggtttataattcattcagttttccaggccaggcagcccgctatccttggatggccttt
ccacgaaatagcatcatgcacttgaaccacacagcaaaccccacctcaaatagtaatttc
ttggacttgaatctcccgccacaacacagcacaggtctgggagggatccctatagcagac
aacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctacccaacattaacatcaactttggtggactgcccaatgcttcttccccctccaacgcc
aaccacagtgcaccaacgtccaacactgccaccaccgacagcctgaattgggacagccct
ggcagctggatggaccccgccatcatcacaggtatcccagcatcaacaggaaataattta
gactctcttcaagatgacaatcctccacactggctaaaatcccttcaggccctcacagag
atggatggccccagtgctgctccttcacaaacccaccacagtaaccccttcaacacacag
atccctctgcacagagccagctggaatccttattcacccccttcaaatcccaccagtttc
cattccccacccccaggctttcagaccgccttcagaccacccagcaaaaccccgacagat
ttactacagagttcggcactggaccgccattag
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